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This page was generated on 2024-06-18 17:57 -0400 (Tue, 18 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4758
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4492
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4464
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 908/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graper 1.20.0  (landing page)
Britta Velten
Snapshot Date: 2024-06-16 14:00 -0400 (Sun, 16 Jun 2024)
git_url: https://git.bioconductor.org/packages/graper
git_branch: RELEASE_3_19
git_last_commit: a4dfa52
git_last_commit_date: 2024-04-30 11:11:42 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


CHECK results for graper on nebbiolo1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: graper
Version: 1.20.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings graper_1.20.0.tar.gz
StartedAt: 2024-06-16 23:51:25 -0400 (Sun, 16 Jun 2024)
EndedAt: 2024-06-16 23:52:46 -0400 (Sun, 16 Jun 2024)
EllapsedTime: 81.2 seconds
RetCode: 0
Status:   OK  
CheckDir: graper.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log’
for details.


Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
                 from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
                 from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/digamma.hpp:15,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.19-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-844.154
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-599.039
ELB improved by 245.116

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-538.49
ELB improved by 60.5486

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-486.731
ELB improved by 51.7588

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.121
ELB improved by 31.6106

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.204
ELB improved by 13.9173

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.558
ELB improved by 5.6459

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.356
ELB improved by 3.20142

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.949
ELB improved by 2.40767

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.793
ELB improved by 2.1557

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.647
ELB improved by 2.1455

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.405
ELB improved by 2.24194

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.039
ELB improved by 2.36642

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.591
ELB improved by 2.44824

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.172
ELB improved by 2.41875

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.929
ELB improved by 2.24296

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.982
ELB improved by 1.94708

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.388
ELB improved by 1.59352

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.149
ELB improved by 1.2392

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.219
ELB improved by 0.930615

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.521
ELB improved by 0.69718

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.982
ELB improved by 0.539588

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.542
ELB improved by 0.440016

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.165
ELB improved by 0.377145

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.831
ELB improved by 0.333417

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.533
ELB improved by 0.298042

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.265
ELB improved by 0.267809

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.022
ELB improved by 0.243839

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.795
ELB improved by 0.226969

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.578
ELB improved by 0.216111

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.37
ELB improved by 0.208807

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.168
ELB improved by 0.202111

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.974
ELB improved by 0.193708

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.791
ELB improved by 0.182982

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.62
ELB improved by 0.170865

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.461
ELB improved by 0.158606

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.315
ELB improved by 0.146907

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.179
ELB improved by 0.135921

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.053
ELB improved by 0.125582

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.937
ELB improved by 0.115818

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.831
ELB improved by 0.106613

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.733
ELB improved by 0.0979894

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.643
ELB improved by 0.089982

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.56
ELB improved by 0.0826187

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.484
ELB improved by 0.0759102

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.414
ELB improved by 0.0698492

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.35
ELB improved by 0.0644136

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.29
ELB improved by 0.059572

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.235
ELB improved by 0.0552893

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.183
ELB improved by 0.0515317

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.135
ELB improved by 0.0482709

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.09
ELB improved by 0.0454882

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.046
ELB improved by 0.0431784

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.005
ELB improved by 0.0413546

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.965
ELB improved by 0.0400533

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.926
ELB improved by 0.0393412

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.886
ELB improved by 0.0393207

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.846
ELB improved by 0.0401271

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.804
ELB improved by 0.041906

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.76
ELB improved by 0.0447432

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.711
ELB improved by 0.0485293

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.658
ELB improved by 0.0527993

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.602
ELB improved by 0.0567196

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.542
ELB improved by 0.059437

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.482
ELB improved by 0.0606489

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.421
ELB improved by 0.0608058

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.36
ELB improved by 0.0606996

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.299
ELB improved by 0.0609529

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.237
ELB improved by 0.0618751

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.174
ELB improved by 0.0635923

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.107
ELB improved by 0.0662068

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.037
ELB improved by 0.0698933

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.963
ELB improved by 0.0749448

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.881
ELB improved by 0.0817784

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.79
ELB improved by 0.0908479

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.688
ELB improved by 0.102329

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.572
ELB improved by 0.115449

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.444
ELB improved by 0.127802

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.308
ELB improved by 0.13594

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.171
ELB improved by 0.137839

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.036
ELB improved by 0.134525

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.908
ELB improved by 0.128468

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.786
ELB improved by 0.121395

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.672
ELB improved by 0.113952

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.566
ELB improved by 0.106321

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.467
ELB improved by 0.0986517

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.376
ELB improved by 0.0911678

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.292
ELB improved by 0.0841254

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.214
ELB improved by 0.0777551

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.142
ELB improved by 0.0722178

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.074
ELB improved by 0.0675775

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.011
ELB improved by 0.0637883

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.95
ELB improved by 0.0606922

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.892
ELB improved by 0.0580364

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.836
ELB improved by 0.0555154

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.784
ELB improved by 0.0528377

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.734
ELB improved by 0.0497971

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.687
ELB improved by 0.0463189

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.645
ELB improved by 0.042461

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.607
ELB improved by 0.0383733

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.572
ELB improved by 0.0342408

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.542
ELB improved by 0.0302349

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.516
ELB improved by 0.0264845

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.493
ELB improved by 0.0230679

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.473
ELB improved by 0.0200185

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.455
ELB improved by 0.0173369

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.44
ELB improved by 0.0150031

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.427
ELB improved by 0.0129867

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.416
ELB improved by 0.0112533

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.406
ELB improved by 0.0097686

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-862.733
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-559.775
ELB improved by 302.958

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-496.874
ELB improved by 62.9007

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.631
ELB improved by 37.2433

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.771
ELB improved by 14.8591

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.568
ELB improved by 6.20296

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.818
ELB improved by 3.75028

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.903
ELB improved by 2.91529

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.318
ELB improved by 2.58449

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.863
ELB improved by 2.45578

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.455
ELB improved by 2.40755

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.084
ELB improved by 2.37086

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.802
ELB improved by 2.28261

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.713
ELB improved by 2.08894

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.932
ELB improved by 1.78016

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.526
ELB improved by 1.40682

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.482
ELB improved by 1.04343

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.739
ELB improved by 0.742949

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.216
ELB improved by 0.523578

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.84
ELB improved by 0.376043

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.56
ELB improved by 0.279668

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.344
ELB improved by 0.216382

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.169
ELB improved by 0.174448

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.023
ELB improved by 0.146553

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.895
ELB improved by 0.127859

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.78
ELB improved by 0.115108

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.673
ELB improved by 0.106188

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.574
ELB improved by 0.0997817

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.479
ELB improved by 0.0950887

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.387
ELB improved by 0.0916193

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.298
ELB improved by 0.0890646

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.211
ELB improved by 0.0872198

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.125
ELB improved by 0.0859402

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.04
ELB improved by 0.0851164

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.955
ELB improved by 0.0846603

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.87
ELB improved by 0.0844967

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.786
ELB improved by 0.0845589

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.701
ELB improved by 0.0847855

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.616
ELB improved by 0.0851182

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.531
ELB improved by 0.0855007

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.445
ELB improved by 0.0858771

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.358
ELB improved by 0.0861911

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.272
ELB improved by 0.0863842

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.186
ELB improved by 0.0863958

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.1
ELB improved by 0.086163

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.014
ELB improved by 0.0856225

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.929
ELB improved by 0.084715

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.846
ELB improved by 0.0833912

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.764
ELB improved by 0.0816186

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.685
ELB improved by 0.0793888

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.608
ELB improved by 0.0767203

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.534
ELB improved by 0.0736592

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.464
ELB improved by 0.070274

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.397
ELB improved by 0.0666489

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.335
ELB improved by 0.062875

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.276
ELB improved by 0.0590422

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.22
ELB improved by 0.0552326

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.169
ELB improved by 0.0515159

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.121
ELB improved by 0.0479468

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.076
ELB improved by 0.0445648

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.035
ELB improved by 0.0413947

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.996
ELB improved by 0.038449

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.961
ELB improved by 0.0357299

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.927
ELB improved by 0.0332323

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.897
ELB improved by 0.0309455

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.868
ELB improved by 0.028856

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.841
ELB improved by 0.0269484

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.816
ELB improved by 0.0252068

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.792
ELB improved by 0.0236158

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.77
ELB improved by 0.0221609

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.749
ELB improved by 0.0208284

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.729
ELB improved by 0.0196063

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.711
ELB improved by 0.0184836

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.693
ELB improved by 0.0174507

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.677
ELB improved by 0.016499

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.661
ELB improved by 0.0156209

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.646
ELB improved by 0.0148097

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.632
ELB improved by 0.0140597

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.619
ELB improved by 0.0133657

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.606
ELB improved by 0.0127231

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.594
ELB improved by 0.0121278

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.583
ELB improved by 0.0115763

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.572
ELB improved by 0.0110654

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.561
ELB improved by 0.0105922

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.551
ELB improved by 0.0101542

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.541
ELB improved by 0.00974898

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-901.105
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-606.614
ELB improved by 294.491

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-541.032
ELB improved by 65.5823

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-492.934
ELB improved by 48.0977

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.857
ELB improved by 22.0767

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.788
ELB improved by 9.06901

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.874
ELB improved by 5.91403

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.675
ELB improved by 5.19898

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.732
ELB improved by 4.94337

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.219
ELB improved by 4.5127

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.512
ELB improved by 3.70738

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.786
ELB improved by 2.72549

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.93
ELB improved by 1.85619

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.703
ELB improved by 1.22736

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.877
ELB improved by 0.826181

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.289
ELB improved by 0.587668

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.841
ELB improved by 0.447563

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.48
ELB improved by 0.361922

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.174
ELB improved by 0.305863

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.907
ELB improved by 0.266376

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.671
ELB improved by 0.236709

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.457
ELB improved by 0.213229

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.264
ELB improved by 0.193875

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.086
ELB improved by 0.177413

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.923
ELB improved by 0.163066

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.773
ELB improved by 0.150329

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.634
ELB improved by 0.138866

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.505
ELB improved by 0.128452

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.386
ELB improved by 0.118936

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.276
ELB improved by 0.110213

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.174
ELB improved by 0.102213

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.079
ELB improved by 0.0948805

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.991
ELB improved by 0.0881731

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.909
ELB improved by 0.0820522

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.832
ELB improved by 0.0764815

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.761
ELB improved by 0.0714245

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.694
ELB improved by 0.0668449

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.631
ELB improved by 0.0627062

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.572
ELB improved by 0.0589725

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.517
ELB improved by 0.055609

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.464
ELB improved by 0.0525826

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.414
ELB improved by 0.0498628

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.367
ELB improved by 0.047421

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.322
ELB improved by 0.0452316

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.279
ELB improved by 0.0432715

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.237
ELB improved by 0.0415201

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.197
ELB improved by 0.0399593

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.158
ELB improved by 0.0385731

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.121
ELB improved by 0.0373475

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.085
ELB improved by 0.0362704

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.05
ELB improved by 0.035331

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.015
ELB improved by 0.0345203

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.981
ELB improved by 0.0338301

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.948
ELB improved by 0.0332536

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.915
ELB improved by 0.0327846

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.883
ELB improved by 0.0324179

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.851
ELB improved by 0.0321489

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.819
ELB improved by 0.0319734

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.787
ELB improved by 0.0318877

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.755
ELB improved by 0.0318884

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.723
ELB improved by 0.0319722

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.691
ELB improved by 0.0321361

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.658
ELB improved by 0.0323767

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.626
ELB improved by 0.0326905

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.593
ELB improved by 0.0330738

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.559
ELB improved by 0.0335223

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.525
ELB improved by 0.034031

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.49
ELB improved by 0.0345942

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.455
ELB improved by 0.0352049

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.419
ELB improved by 0.0358552

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.383
ELB improved by 0.0365359

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.346
ELB improved by 0.0372362

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.308
ELB improved by 0.0379436

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.269
ELB improved by 0.0386443

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.23
ELB improved by 0.0393228

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.19
ELB improved by 0.039962

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.149
ELB improved by 0.0405439

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.108
ELB improved by 0.0410495

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.067
ELB improved by 0.0414593

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.025
ELB improved by 0.0417542

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.983
ELB improved by 0.0419162

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.941
ELB improved by 0.0419289

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.899
ELB improved by 0.0417786

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.858
ELB improved by 0.041455

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.817
ELB improved by 0.0409519

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.777
ELB improved by 0.0402679

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.737
ELB improved by 0.0394063

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.699
ELB improved by 0.0383754

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.662
ELB improved by 0.0371881

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.626
ELB improved by 0.0358614

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.591
ELB improved by 0.0344156

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.558
ELB improved by 0.0328732

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.527
ELB improved by 0.031258

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.498
ELB improved by 0.0295942

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.47
ELB improved by 0.027905

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.444
ELB improved by 0.0262123

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.419
ELB improved by 0.0245357

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.396
ELB improved by 0.0228925

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.375
ELB improved by 0.021297

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.355
ELB improved by 0.0197608

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.337
ELB improved by 0.0182925

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.32
ELB improved by 0.0168986

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.304
ELB improved by 0.015583

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.29
ELB improved by 0.0143478

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.277
ELB improved by 0.0131933

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.265
ELB improved by 0.0121186

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.253
ELB improved by 0.0111218

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.243
ELB improved by 0.0102

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.234
ELB improved by 0.00934995

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-872.857
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.023
ELB improved by 303.834

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-506.147
ELB improved by 62.876

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.52
ELB improved by 37.6272

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.188
ELB improved by 17.3317

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.704
ELB improved by 9.48372

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.735
ELB improved by 7.9697

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.315
ELB improved by 8.41946

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.425
ELB improved by 8.89034

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.333
ELB improved by 8.09195

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.348
ELB improved by 5.98489

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.57
ELB improved by 3.77754

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.304
ELB improved by 2.26596

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.89
ELB improved by 1.4142

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.93
ELB improved by 0.960409

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.216
ELB improved by 0.713525

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.646
ELB improved by 0.569915

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.161
ELB improved by 0.485712

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.709
ELB improved by 0.451734

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.24
ELB improved by 0.469

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.717
ELB improved by 0.523427

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.151
ELB improved by 0.565892

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.606
ELB improved by 0.545016

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.136
ELB improved by 0.469829

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.724
ELB improved by 0.412044

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.321
ELB improved by 0.402448

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.894
ELB improved by 0.427313

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.428
ELB improved by 0.465823

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.938
ELB improved by 0.489764

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.454
ELB improved by 0.484561

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.987
ELB improved by 0.466533

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.534
ELB improved by 0.453069

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.086
ELB improved by 0.447923

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.637
ELB improved by 0.449407

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.181
ELB improved by 0.455464

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.717
ELB improved by 0.46457

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.241
ELB improved by 0.475453

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.755
ELB improved by 0.486098

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.263
ELB improved by 0.491976

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.778
ELB improved by 0.485558

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.317
ELB improved by 0.461078

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.896
ELB improved by 0.421016

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.522
ELB improved by 0.373985

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.194
ELB improved by 0.327876

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.906
ELB improved by 0.28795

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.647
ELB improved by 0.258574

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.402
ELB improved by 0.245443

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.144
ELB improved by 0.258264

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.834
ELB improved by 0.310005

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.445
ELB improved by 0.388714

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.036
ELB improved by 0.409327

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.71
ELB improved by 0.325323

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.486
ELB improved by 0.224187

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.326
ELB improved by 0.160032

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.203
ELB improved by 0.122804

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.106
ELB improved by 0.0973381

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.027
ELB improved by 0.0783958

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.962
ELB improved by 0.0651154

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.906
ELB improved by 0.056508

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.855
ELB improved by 0.0511001

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.807
ELB improved by 0.0476128

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.762
ELB improved by 0.0451401

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.719
ELB improved by 0.0430209

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.678
ELB improved by 0.0407351

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.64
ELB improved by 0.0379214

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.606
ELB improved by 0.0344666

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.575
ELB improved by 0.0305433

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.549
ELB improved by 0.0265134

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.526
ELB improved by 0.022746

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.507
ELB improved by 0.0194761

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.49
ELB improved by 0.016775

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.475
ELB improved by 0.0145987

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.462
ELB improved by 0.012854

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.451
ELB improved by 0.0114427

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.441
ELB improved by 0.0102825

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-376.431
ELB improved by 0.0093113

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  1.974   0.216   2.180 

Example timings

graper.Rcheck/graper-Ex.timings

nameusersystemelapsed
coef.graper0.0590.0080.068
getPIPs0.0500.0110.062
graper0.0900.0160.106
makeExampleData0.0030.0070.011
makeExampleDataWithUnequalGroups0.0130.0000.012
plotELBO0.2180.0310.250
plotGroupPenalties0.8270.0510.880
plotPosterior0.4440.0120.455
predict.graper2.0830.0352.118
print.graper0.0430.0190.064