Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-07-16 17:42 -0400 (Tue, 16 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4742
palomino7Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4484
merida1macOS 12.7.4 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4513
kjohnson1macOS 13.6.6 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4462
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 908/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
graper 1.20.0  (landing page)
Britta Velten
Snapshot Date: 2024-07-14 14:00 -0400 (Sun, 14 Jul 2024)
git_url: https://git.bioconductor.org/packages/graper
git_branch: RELEASE_3_19
git_last_commit: a4dfa52
git_last_commit_date: 2024-04-30 11:11:42 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published


CHECK results for graper on kjohnson1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: graper
Version: 1.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz
StartedAt: 2024-07-15 21:33:55 -0400 (Mon, 15 Jul 2024)
EndedAt: 2024-07-15 21:35:06 -0400 (Mon, 15 Jul 2024)
EllapsedTime: 71.3 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: graper.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... WARNING
Found the following significant warnings:
  /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
  #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log’
for details.


Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
In file included from fit_graper.cpp:4:
In file included from ./graper_linear_dense_ff.h:2:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:15:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
#    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
     ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-869.392
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-599.408
ELB improved by 269.984

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-542.295
ELB improved by 57.1136

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.399
ELB improved by 48.8952

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.865
ELB improved by 27.5347

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.186
ELB improved by 10.6789

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.131
ELB improved by 5.05498

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.299
ELB improved by 3.83203

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.711
ELB improved by 3.58776

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.034
ELB improved by 3.67724

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.091
ELB improved by 3.94288

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.766
ELB improved by 4.32529

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.049
ELB improved by 4.71645

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.189
ELB improved by 4.85989

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.661
ELB improved by 4.52855

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.882
ELB improved by 3.77918

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.065
ELB improved by 2.8162

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.122
ELB improved by 1.94348

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.774
ELB improved by 1.3479

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.763
ELB improved by 1.01117

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.925
ELB improved by 0.837976

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.197
ELB improved by 0.72794

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.572
ELB improved by 0.625122

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.033
ELB improved by 0.538872

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.547
ELB improved by 0.486258

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.084
ELB improved by 0.462406

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.628
ELB improved by 0.456323

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.168
ELB improved by 0.459975

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.7
ELB improved by 0.468216

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.222
ELB improved by 0.477518

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.737
ELB improved by 0.485371

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.247
ELB improved by 0.490116

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.756
ELB improved by 0.490861

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.269
ELB improved by 0.487311

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.789
ELB improved by 0.479546

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.321
ELB improved by 0.467817

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.869
ELB improved by 0.452408

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.435
ELB improved by 0.433595

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.023
ELB improved by 0.411693

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.636
ELB improved by 0.387107

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.276
ELB improved by 0.360338

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.944
ELB improved by 0.331935

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.642
ELB improved by 0.302481

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.369
ELB improved by 0.272633

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.126
ELB improved by 0.243157

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.911
ELB improved by 0.214859

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.723
ELB improved by 0.188445

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.558
ELB improved by 0.164382

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.415
ELB improved by 0.142844

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.292
ELB improved by 0.123727

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.185
ELB improved by 0.106748

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.093
ELB improved by 0.0915921

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.015
ELB improved by 0.0780522

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.949
ELB improved by 0.0660848

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.893
ELB improved by 0.0557375

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.846
ELB improved by 0.0470293

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.806
ELB improved by 0.0398787

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.772
ELB improved by 0.0341064

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.743
ELB improved by 0.0294811

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.717
ELB improved by 0.0257659

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.694
ELB improved by 0.0227485

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.674
ELB improved by 0.0202536

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.656
ELB improved by 0.0181448

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.64
ELB improved by 0.0163217

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.625
ELB improved by 0.014715

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.612
ELB improved by 0.0132799

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.6
ELB improved by 0.0119904

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.589
ELB improved by 0.0108324

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.579
ELB improved by 0.00979872

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-870.047
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-544.651
ELB improved by 325.396

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-489.751
ELB improved by 54.8999

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.85
ELB improved by 28.9015

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.31
ELB improved by 12.5401

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.105
ELB improved by 6.20516

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.224
ELB improved by 3.88065

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.169
ELB improved by 3.05495

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.296
ELB improved by 2.87305

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.314
ELB improved by 2.98177

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.064
ELB improved by 3.25032

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.505
ELB improved by 3.55854

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.818
ELB improved by 3.68731

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.409
ELB improved by 3.40887

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.673
ELB improved by 2.7361

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.725
ELB improved by 1.94755

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.414
ELB improved by 1.3111

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.507
ELB improved by 0.906995

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.824
ELB improved by 0.683352

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.258
ELB improved by 0.565819

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.754
ELB improved by 0.503848

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.284
ELB improved by 0.470355

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.832
ELB improved by 0.452169

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.388
ELB improved by 0.443676

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.944
ELB improved by 0.443925

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.489
ELB improved by 0.455493

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.006
ELB improved by 0.482695

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.481
ELB improved by 0.524902

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.913
ELB improved by 0.567769

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.316
ELB improved by 0.596845

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.695
ELB improved by 0.62179

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.034
ELB improved by 0.660633

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.314
ELB improved by 0.720374

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.519
ELB improved by 0.79459

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.654
ELB improved by 0.864668

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.737
ELB improved by 0.917397

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.78
ELB improved by 0.957306

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.791
ELB improved by 0.989109

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.786
ELB improved by 1.00483

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.797
ELB improved by 0.988475

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.87
ELB improved by 0.926973

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.05
ELB improved by 0.82058

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.364
ELB improved by 0.685619

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.819
ELB improved by 0.544841

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.405
ELB improved by 0.414684

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.101
ELB improved by 0.303507

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.885
ELB improved by 0.215864

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.733
ELB improved by 0.152373

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.624
ELB improved by 0.109201

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.543
ELB improved by 0.0807076

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.481
ELB improved by 0.0619507

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.432
ELB improved by 0.049434

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.391
ELB improved by 0.0408951

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.356
ELB improved by 0.0349131

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.325
ELB improved by 0.0305997

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.298
ELB improved by 0.0273973

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.273
ELB improved by 0.024957

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.25
ELB improved by 0.0230656

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.228
ELB improved by 0.0216029

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.208
ELB improved by 0.0205177

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.188
ELB improved by 0.0198171

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.168
ELB improved by 0.0195672

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.148
ELB improved by 0.0199077

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.127
ELB improved by 0.0210809

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.104
ELB improved by 0.0234718

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.076
ELB improved by 0.0276216

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.042
ELB improved by 0.0340819

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.999
ELB improved by 0.0428171

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.947
ELB improved by 0.0519991

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.89
ELB improved by 0.0574647

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.834
ELB improved by 0.0555417

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.787
ELB improved by 0.0472976

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.75
ELB improved by 0.0373312

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.721
ELB improved by 0.0290688

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.697
ELB improved by 0.023365

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.677
ELB improved by 0.0197922

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.66
ELB improved by 0.0177311

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.643
ELB improved by 0.0167246

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.626
ELB improved by 0.0164871

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.61
ELB improved by 0.0168296

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.592
ELB improved by 0.0175746

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.574
ELB improved by 0.018477

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.554
ELB improved by 0.0191734

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.535
ELB improved by 0.0192159

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.517
ELB improved by 0.0182376

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.501
ELB improved by 0.0161853

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.487
ELB improved by 0.0134124

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.477
ELB improved by 0.0104969

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.469
ELB improved by 0.00793409

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-899.736
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-573.54
ELB improved by 326.195

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-512.996
ELB improved by 60.5449

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.973
ELB improved by 31.0222

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.779
ELB improved by 12.1939

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.262
ELB improved by 5.51754

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.755
ELB improved by 3.50727

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.782
ELB improved by 2.97222

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.908
ELB improved by 2.8743

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.987
ELB improved by 2.92155

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.009
ELB improved by 2.97791

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.051
ELB improved by 2.95813

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.236
ELB improved by 2.81425

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.692
ELB improved by 2.54477

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.513
ELB improved by 2.17903

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.742
ELB improved by 1.77039

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.346
ELB improved by 1.39578

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.236
ELB improved by 1.11003

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.313
ELB improved by 0.923357

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.496
ELB improved by 0.817389

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.73
ELB improved by 0.765662

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.983
ELB improved by 0.747023

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.234
ELB improved by 0.748646

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.471
ELB improved by 0.763277

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.685
ELB improved by 0.78607

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.872
ELB improved by 0.813284

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.029
ELB improved by 0.842611

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.155
ELB improved by 0.873892

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.246
ELB improved by 0.909305

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.293
ELB improved by 0.952677

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.285
ELB improved by 1.00814

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.206
ELB improved by 1.07928

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.034
ELB improved by 1.17204

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.728
ELB improved by 1.30569

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.207
ELB improved by 1.52108

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.438
ELB improved by 1.76878

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.678
ELB improved by 1.76052

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.265
ELB improved by 1.41289

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.284
ELB improved by 0.980497

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.63
ELB improved by 0.654372

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.177
ELB improved by 0.452621

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.839
ELB improved by 0.338057

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.561
ELB improved by 0.277686

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.308
ELB improved by 0.2532

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.05
ELB improved by 0.258169

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.758
ELB improved by 0.292389

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.401
ELB improved by 0.356352

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.944
ELB improved by 0.456964

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.354
ELB improved by 0.59001

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.746
ELB improved by 0.608899

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.324
ELB improved by 0.422005

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.094
ELB improved by 0.229135

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.973
ELB improved by 0.120922

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.903
ELB improved by 0.0706946

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.855
ELB improved by 0.0479078

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.818
ELB improved by 0.0366271

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.788
ELB improved by 0.0300954

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.762
ELB improved by 0.0256716

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.74
ELB improved by 0.0223319

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.72
ELB improved by 0.0196543

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.703
ELB improved by 0.0174404

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.687
ELB improved by 0.0155797

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.673
ELB improved by 0.014

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.661
ELB improved by 0.0126496

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.649
ELB improved by 0.0114885

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.639
ELB improved by 0.0104855

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.629
ELB improved by 0.00961515

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-927.38
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584.769
ELB improved by 342.612

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.76
ELB improved by 57.0085

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.794
ELB improved by 33.966

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.474
ELB improved by 14.3204

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.012
ELB improved by 6.46143

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-468.627
ELB improved by 4.38509

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.579
ELB improved by 4.04795

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.343
ELB improved by 4.23612

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.842
ELB improved by 4.50132

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.319
ELB improved by 4.52229

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.233
ELB improved by 4.0864

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.969
ELB improved by 3.26415

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.589
ELB improved by 2.38027

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.869
ELB improved by 1.71923

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.508
ELB improved by 1.36126

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.271
ELB improved by 1.23722

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.134
ELB improved by 1.13719

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.248
ELB improved by 0.886009

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.642
ELB improved by 0.606217

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.233
ELB improved by 0.408321

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.937
ELB improved by 0.296674

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.702
ELB improved by 0.234628

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.506
ELB improved by 0.195618

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.338
ELB improved by 0.167876

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.192
ELB improved by 0.146524

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.063
ELB improved by 0.129313

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.948
ELB improved by 0.115048

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.845
ELB improved by 0.103011

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.752
ELB improved by 0.0927291

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.668
ELB improved by 0.0838673

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.592
ELB improved by 0.0761751

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.522
ELB improved by 0.069458

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.459
ELB improved by 0.0635611

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.4
ELB improved by 0.0583593

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.347
ELB improved by 0.0537501

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.297
ELB improved by 0.0496488

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.251
ELB improved by 0.0459855

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.208
ELB improved by 0.0427015

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.169
ELB improved by 0.0397477

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.131
ELB improved by 0.0370826

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.097
ELB improved by 0.0346712

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.064
ELB improved by 0.0324835

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.034
ELB improved by 0.0304939

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.005
ELB improved by 0.0286804

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.978
ELB improved by 0.0270241

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.953
ELB improved by 0.0255084

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.928
ELB improved by 0.024119

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.906
ELB improved by 0.0228435

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.884
ELB improved by 0.0216708

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.863
ELB improved by 0.0205914

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.844
ELB improved by 0.0195968

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.825
ELB improved by 0.0186796

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.807
ELB improved by 0.0178331

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.79
ELB improved by 0.0170516

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.774
ELB improved by 0.0163299

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.758
ELB improved by 0.0156635

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.743
ELB improved by 0.0150482

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.729
ELB improved by 0.0144806

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.715
ELB improved by 0.0139574

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.701
ELB improved by 0.0134759

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.688
ELB improved by 0.0130336

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.676
ELB improved by 0.0126285

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.663
ELB improved by 0.0122586

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.651
ELB improved by 0.0119223

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.64
ELB improved by 0.0116183

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.628
ELB improved by 0.0113452

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.617
ELB improved by 0.0111021

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.606
ELB improved by 0.0108881

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.596
ELB improved by 0.0107023

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.585
ELB improved by 0.010544

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.575
ELB improved by 0.0104125

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.565
ELB improved by 0.0103071

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.554
ELB improved by 0.0102272

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.544
ELB improved by 0.0101719

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.534
ELB improved by 0.0101405

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.524
ELB improved by 0.0101321

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.514
ELB improved by 0.0101457

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.504
ELB improved by 0.0101803

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.493
ELB improved by 0.0102346

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.483
ELB improved by 0.0103075

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.473
ELB improved by 0.0103976

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.462
ELB improved by 0.0105037

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.451
ELB improved by 0.0106245

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.441
ELB improved by 0.0107588

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.43
ELB improved by 0.0109056

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.419
ELB improved by 0.0110639

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.407
ELB improved by 0.0112328

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.396
ELB improved by 0.0114117

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.384
ELB improved by 0.0116

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.373
ELB improved by 0.0117975

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.361
ELB improved by 0.0120039

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.348
ELB improved by 0.0122191

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.336
ELB improved by 0.0124433

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.323
ELB improved by 0.0126764

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.31
ELB improved by 0.0129188

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.297
ELB improved by 0.0131708

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.284
ELB improved by 0.0134325

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.27
ELB improved by 0.0137045

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.256
ELB improved by 0.0139871

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.242
ELB improved by 0.0142806

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.227
ELB improved by 0.0145855

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.212
ELB improved by 0.014902

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.197
ELB improved by 0.0152306

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.182
ELB improved by 0.0155715

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.166
ELB improved by 0.015925

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.149
ELB improved by 0.0162913

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.133
ELB improved by 0.0166704

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.116
ELB improved by 0.0170625

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.098
ELB improved by 0.0174673

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.08
ELB improved by 0.0178849

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.062
ELB improved by 0.0183148

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.043
ELB improved by 0.0187566

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.024
ELB improved by 0.0192098

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.004
ELB improved by 0.0196734

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.984
ELB improved by 0.0201467

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.964
ELB improved by 0.0206285

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.942
ELB improved by 0.0211172

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.921
ELB improved by 0.0216114

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.899
ELB improved by 0.0221091

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.876
ELB improved by 0.0226082

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.853
ELB improved by 0.0231062

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.829
ELB improved by 0.0236004

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.805
ELB improved by 0.0240875

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.781
ELB improved by 0.0245643

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.756
ELB improved by 0.025027

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.73
ELB improved by 0.0254714

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.704
ELB improved by 0.0258931

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.678
ELB improved by 0.0262874

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.651
ELB improved by 0.0266493

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.624
ELB improved by 0.0269736

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.597
ELB improved by 0.027255

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.57
ELB improved by 0.027488

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.542
ELB improved by 0.0276673

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.514
ELB improved by 0.0277877

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.486
ELB improved by 0.0278443

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.459
ELB improved by 0.0278327

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.431
ELB improved by 0.0277492

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.403
ELB improved by 0.0275908

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.376
ELB improved by 0.0273555

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.349
ELB improved by 0.0270423

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.322
ELB improved by 0.0266515

iteration 143
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.296
ELB improved by 0.0261846

iteration 144
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.27
ELB improved by 0.0256443

iteration 145
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.245
ELB improved by 0.0250346

iteration 146
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.221
ELB improved by 0.0243607

iteration 147
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.197
ELB improved by 0.0236287

iteration 148
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.174
ELB improved by 0.0228457

iteration 149
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.152
ELB improved by 0.0220193

iteration 150
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.131
ELB improved by 0.0211578

iteration 151
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.111
ELB improved by 0.0202693

iteration 152
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.092
ELB improved by 0.0193623

iteration 153
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.073
ELB improved by 0.0184448

iteration 154
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.056
ELB improved by 0.0175246

iteration 155
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.039
ELB improved by 0.0166089

iteration 156
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.023
ELB improved by 0.0157042

iteration 157
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.009
ELB improved by 0.0148162

iteration 158
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.995
ELB improved by 0.01395

iteration 159
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.981
ELB improved by 0.0131097

iteration 160
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.969
ELB improved by 0.0122988

iteration 161
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.958
ELB improved by 0.01152

iteration 162
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.947
ELB improved by 0.0107753

iteration 163
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.937
ELB improved by 0.0100659

iteration 164
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.927
ELB improved by 0.00939265

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.815   0.225   3.040 

Example timings

graper.Rcheck/graper-Ex.timings

nameusersystemelapsed
coef.graper0.0890.0160.105
getPIPs0.0820.0140.095
graper0.1370.0190.157
makeExampleData0.0140.0010.015
makeExampleDataWithUnequalGroups0.0370.0020.039
plotELBO0.2650.0170.282
plotGroupPenalties0.7750.0230.802
plotPosterior0.6100.0190.631
predict.graper3.0660.0853.175
print.graper0.0820.0110.097