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This page was generated on 2021-09-13 15:06:26 -0400 (Mon, 13 Sep 2021).

CHECK results for gcapc on tokay2

To the developers/maintainers of the gcapc package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gcapc.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 693/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gcapc 1.16.0  (landing page)
Mingxiang Teng
Snapshot Date: 2021-09-12 04:50:10 -0400 (Sun, 12 Sep 2021)
git_url: https://git.bioconductor.org/packages/gcapc
git_branch: RELEASE_3_13
git_last_commit: 38a05b9
git_last_commit_date: 2021-05-19 12:24:48 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: gcapc
Version: 1.16.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gcapc.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings gcapc_1.16.0.tar.gz
StartedAt: 2021-09-12 22:45:12 -0400 (Sun, 12 Sep 2021)
EndedAt: 2021-09-12 22:56:36 -0400 (Sun, 12 Sep 2021)
EllapsedTime: 683.8 seconds
RetCode: 0
Status:   OK  
CheckDir: gcapc.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:gcapc.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings gcapc_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/gcapc.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'gcapc/DESCRIPTION' ... OK
* this is package 'gcapc' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'gcapc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
peaksCAT    75.17   2.41   77.57
refinePeaks 46.99   0.58   47.57
gcapcPeaks  42.03   1.73   43.77
gcEffects   36.37   2.98   44.76
bindWidth    7.86   0.43    9.22
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
peaksCAT    74.31   1.73   76.04
gcapcPeaks  42.34   0.63   42.97
refinePeaks 41.22   0.41   41.64
gcEffects   35.65   2.79   38.47
bindWidth    6.90   0.16    7.04
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

gcapc.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/gcapc_1.16.0.tar.gz && rm -rf gcapc.buildbin-libdir && mkdir gcapc.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gcapc.buildbin-libdir gcapc_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL gcapc_1.16.0.zip && rm gcapc_1.16.0.tar.gz gcapc_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 83 3421k   83 2864k    0     0  3855k      0 --:--:-- --:--:-- --:--:-- 3855k
100 3421k  100 3421k    0     0  4140k      0 --:--:-- --:--:-- --:--:-- 4142k

install for i386

* installing *source* package 'gcapc' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gcapc'
    finding HTML links ... done
    bindWidth                               html  
    gcEffects                               html  
    gcapcPeaks                              html  
    peaksCAT                                html  
    read5endCoverage                        html  
    refinePeaks                             html  
    refineSites                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gcapc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gcapc' as gcapc_1.16.0.zip
* DONE (gcapc)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'gcapc' successfully unpacked and MD5 sums checked

Tests output


Example timings

gcapc.Rcheck/examples_i386/gcapc-Ex.timings

nameusersystemelapsed
bindWidth7.860.439.22
gcEffects36.37 2.9844.76
gcapcPeaks42.03 1.7343.77
peaksCAT75.17 2.4177.57
read5endCoverage0.340.050.39
refinePeaks46.99 0.5847.57

gcapc.Rcheck/examples_x64/gcapc-Ex.timings

nameusersystemelapsed
bindWidth6.900.167.04
gcEffects35.65 2.7938.47
gcapcPeaks42.34 0.6342.97
peaksCAT74.31 1.7376.04
read5endCoverage0.330.020.35
refinePeaks41.22 0.4141.64