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This page was generated on 2024-06-11 14:40 -0400 (Tue, 11 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4757
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4491
lconwaymacOS 12.7.1 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4522
kjohnson3macOS 13.6.5 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4468
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 744/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowMatch 1.40.0  (landing page)
Ariful Azad
Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024)
git_url: https://git.bioconductor.org/packages/flowMatch
git_branch: RELEASE_3_19
git_last_commit: e80de10
git_last_commit_date: 2024-04-30 10:34:30 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


INSTALL results for flowMatch on palomino3

To the developers/maintainers of the flowMatch package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowMatch.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowMatch
Version: 1.40.0
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL flowMatch
StartedAt: 2024-06-09 15:48:51 -0400 (Sun, 09 Jun 2024)
EndedAt: 2024-06-09 15:49:35 -0400 (Sun, 09 Jun 2024)
EllapsedTime: 43.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL flowMatch
###
##############################################################################
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* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'flowMatch' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BipartiteGraph.cpp -o BipartiteGraph.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o
MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)':
MinWghtEdgCoverBipartite.cpp:271:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  271 |         for(int i=0; i<tree.height.size(); i++)
      |                      ~^~~~~~~~~~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)':
MinWghtEdgCoverBipartite.cpp:487:45: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable]
  487 |                                         int delta_cx_cy  = 0;
      |                                             ^~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp: In function 'classTemplate buildTemplate(std::vector<std::vector<templatePair> >&, double, mclust&)':
MinWghtEdgCoverBipartite.cpp:792:54: warning: 'template1' may be used uninitialized [-Wmaybe-uninitialized]
  792 |                 mergeTemplate(templatePairs[template1][template2], template1, template2,mergedTemplate, curIndex+1 );
      |                                                      ^
MinWghtEdgCoverBipartite.cpp:787:21: note: 'template1' was declared here
  787 |                 int template1, template2;
      |                     ^~~~~~~~~
MinWghtEdgCoverBipartite.cpp:792:65: warning: 'template2' may be used uninitialized [-Wmaybe-uninitialized]
  792 |                 mergeTemplate(templatePairs[template1][template2], template1, template2,mergedTemplate, curIndex+1 );
      |                                                                 ^
MinWghtEdgCoverBipartite.cpp:787:32: note: 'template2' was declared here
  787 |                 int template1, template2;
      |                                ^~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c flowMatch.cpp -o flowMatch.o
flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)':
flowMatch.cpp:43:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   43 |         for(int i=0; i<mec.sCoverVecVec.size(); i++)
      |                      ~^~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:45:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   45 |                 for(int j=0; j<mec.sCoverVecVec[i].size(); j++)
      |                              ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:53:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   53 |         for(int i=0; i<mec.tCoverVecVec.size(); i++)
      |                      ~^~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:55:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
   55 |                 for(int j=0; j<mec.tCoverVecVec[i].size(); j++)
      |                              ~^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-flowMatch/00new/flowMatch/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowMatch)