Back to Multiple platform build/check report for BioC 3.14
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-11-26 15:05:17 -0500 (Fri, 26 Nov 2021).

INSTALL results for fishpond on tokay2

To the developers/maintainers of the fishpond package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fishpond.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 645/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fishpond 2.0.0  (landing page)
Michael Love
Snapshot Date: 2021-11-25 04:15:05 -0500 (Thu, 25 Nov 2021)
git_url: https://git.bioconductor.org/packages/fishpond
git_branch: RELEASE_3_14
git_last_commit: ddccf67
git_last_commit_date: 2021-10-26 12:49:38 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: fishpond
Version: 2.0.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fishpond_2.0.0.tar.gz && rm -rf fishpond.buildbin-libdir && mkdir fishpond.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fishpond.buildbin-libdir fishpond_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fishpond_2.0.0.zip && rm fishpond_2.0.0.tar.gz fishpond_2.0.0.zip
StartedAt: 2021-11-25 08:00:23 -0500 (Thu, 25 Nov 2021)
EndedAt: 2021-11-25 08:01:23 -0500 (Thu, 25 Nov 2021)
EllapsedTime: 60.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fishpond_2.0.0.tar.gz && rm -rf fishpond.buildbin-libdir && mkdir fishpond.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fishpond.buildbin-libdir fishpond_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fishpond_2.0.0.zip && rm fishpond_2.0.0.tar.gz fishpond_2.0.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  430k  100  430k    0     0  1437k      0 --:--:-- --:--:-- --:--:-- 1440k

install for i386

* installing *source* package 'fishpond' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c readEDS.cpp -o readEDS.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o fishpond.dll tmp.def RcppExports.o readEDS.o -lz -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/fishpond.buildbin-libdir/00LOCK-fishpond/00new/fishpond/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fishpond'
    finding HTML links ... done
    addStatsFromCSV                         html  
    computeInfRV                            html  
    deswish                                 html  
    fishpond-package                        html  
    getTrace                                html  
    importAllelicCounts                     html  
    isoformProportions                      html  
    labelKeep                               html  
    loadFry                                 html  
    makeInfReps                             html  
    makeSimSwishData                        html  
    miniSwish                               html  
    plotInfReps                             html  
    plotMASwish                             html  
    readEDS                                 html  
    scaleInfReps                            html  
    splitSwish                              html  
    swish                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fishpond' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c readEDS.cpp -o readEDS.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o fishpond.dll tmp.def RcppExports.o readEDS.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/fishpond.buildbin-libdir/fishpond/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fishpond' as fishpond_2.0.0.zip
* DONE (fishpond)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'fishpond' successfully unpacked and MD5 sums checked