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This page was generated on 2021-09-24 15:06:40 -0400 (Fri, 24 Sep 2021).

BUILD BIN results for fastseg on machv2

To the developers/maintainers of the fastseg package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fastseg.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 619/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fastseg 1.38.0  (landing page)
Guenter Klambauer
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/fastseg
git_branch: RELEASE_3_13
git_last_commit: 48225db
git_last_commit_date: 2021-05-19 11:50:51 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: fastseg
Version: 1.38.0
Command: rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fastseg_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R fastseg.buildbin-libdir
StartedAt: 2021-09-24 02:02:36 -0400 (Fri, 24 Sep 2021)
EndedAt: 2021-09-24 02:03:46 -0400 (Fri, 24 Sep 2021)
EllapsedTime: 70.2 seconds
RetCode: 0
Status:   OK  
PackageFile: fastseg_1.38.0.tgz
PackageFileSize: 558.2 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf fastseg.buildbin-libdir && mkdir fastseg.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh fastseg_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R fastseg.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=fastseg.buildbin-libdir fastseg_1.38.0.tar.gz'
>>>>>>> 

* installing *source* package ‘fastseg’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_fastseg.c -o R_init_fastseg.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c segment.cpp -o segment.o
segment.cpp:65:9: warning: unused variable 'Rf_beta' [-Wunused-variable]
        double beta,nn;
               ^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:212:15: note: expanded from macro 'beta'
#define beta            Rf_beta
                        ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c segmentCyberT.cpp -o segmentCyberT.o
segmentCyberT.cpp:63:50: warning: unused variable 'Rf_beta' [-Wunused-variable]
        double newStatisticBptLeft,newStatisticBptRight,beta,nn;
                                                        ^
/Library/Frameworks/R.framework/Resources/include/Rmath.h:212:15: note: expanded from macro 'beta'
#define beta            Rf_beta
                        ^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o fastseg.so R_init_fastseg.o segment.o segmentCyberT.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/fastseg.buildbin-libdir/00LOCK-fastseg/00new/fastseg/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastseg)


>>>>>>> 
>>>>>>> FIXING LINKS FOR fastseg.buildbin-libdir/fastseg/libs/fastseg.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "fastseg.buildbin-libdir/fastseg/libs/fastseg.so"