Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-06-21 17:38 -0400 (Fri, 21 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 (2024-04-24) -- "Puppy Cup" 4758
palomino3Windows Server 2022 Datacenterx644.4.0 (2024-04-24 ucrt) -- "Puppy Cup" 4492
merida1macOS 12.7.4 Montereyx86_644.4.0 (2024-04-24) -- "Puppy Cup" 4506
kjohnson1macOS 13.6.6 Venturaarm644.4.0 (2024-04-24) -- "Puppy Cup" 4464
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 674/2300HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epivizrServer 1.32.0  (landing page)
Hector Corrada Bravo
Snapshot Date: 2024-06-19 14:00 -0400 (Wed, 19 Jun 2024)
git_url: https://git.bioconductor.org/packages/epivizrServer
git_branch: RELEASE_3_19
git_last_commit: d436410
git_last_commit_date: 2024-04-30 10:50:47 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


BUILD results for epivizrServer on nebbiolo1

To the developers/maintainers of the epivizrServer package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epivizrServer.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: epivizrServer
Version: 1.32.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epivizrServer
StartedAt: 2024-06-19 17:19:21 -0400 (Wed, 19 Jun 2024)
EndedAt: 2024-06-19 17:19:26 -0400 (Wed, 19 Jun 2024)
EllapsedTime: 5.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epivizrServer
###
##############################################################################
##############################################################################


* checking for file ‘epivizrServer/DESCRIPTION’ ... OK
* preparing ‘epivizrServer’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘epivizrServer.Rmd’ using rmarkdown
createTcpServer: address already in use

Quitting from lines 24-56 [unnamed-chunk-1] (epivizrServer.Rmd)
Error: processing vignette 'epivizrServer.Rmd' failed with diagnostics:
Error starting epivizServer, likely because port 7123 is in use.
Try a different port number or setting try_ports=TRUE (see ?startEpiviz).
--- failed re-building ‘epivizrServer.Rmd’

SUMMARY: processing the following file failed:
  ‘epivizrServer.Rmd’

Error: Vignette re-building failed.
Execution halted