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This page was generated on 2021-09-24 15:06:08 -0400 (Fri, 24 Sep 2021).

CHECK results for drugTargetInteractions on tokay2

To the developers/maintainers of the drugTargetInteractions package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/drugTargetInteractions.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 535/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
drugTargetInteractions 1.0.2  (landing page)
Thomas Girke
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/drugTargetInteractions
git_branch: RELEASE_3_13
git_last_commit: dd1665a
git_last_commit_date: 2021-08-26 14:37:10 -0400 (Thu, 26 Aug 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  NO, package depends on 'UniProt.ws' which is not available
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: drugTargetInteractions
Version: 1.0.2
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:drugTargetInteractions.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings drugTargetInteractions_1.0.2.tar.gz
StartedAt: 2021-09-23 21:49:18 -0400 (Thu, 23 Sep 2021)
EndedAt: 2021-09-23 21:57:19 -0400 (Thu, 23 Sep 2021)
EllapsedTime: 480.5 seconds
RetCode: 0
Status:   OK  
CheckDir: drugTargetInteractions.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:drugTargetInteractions.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings drugTargetInteractions_1.0.2.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/drugTargetInteractions.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'drugTargetInteractions/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'drugTargetInteractions' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'drugTargetInteractions' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getCacheFile: no visible binding for global variable 'create_time'
getParalogs: no visible global function definition for 'setNames'
Undefined global functions or variables:
  create_time setNames
Consider adding
  importFrom("stats", "setNames")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
drugTargetAnnotTable 44.96   4.88   50.67
processDrugage       35.92   0.36   36.77
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
drugTargetAnnotTable 46.42   0.61   47.03
processDrugage       32.78   0.32   33.47
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/drugTargetInteractions.Rcheck/00check.log'
for details.



Installation output

drugTargetInteractions.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/drugTargetInteractions_1.0.2.tar.gz && rm -rf drugTargetInteractions.buildbin-libdir && mkdir drugTargetInteractions.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=drugTargetInteractions.buildbin-libdir drugTargetInteractions_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL drugTargetInteractions_1.0.2.zip && rm drugTargetInteractions_1.0.2.tar.gz drugTargetInteractions_1.0.2.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 40  553k   40  221k    0     0   817k      0 --:--:-- --:--:-- --:--:--  817k
100  553k  100  553k    0     0  1768k      0 --:--:-- --:--:-- --:--:-- 1768k

install for i386

* installing *source* package 'drugTargetInteractions' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'drugTargetInteractions'
    finding HTML links ... done
    cmpIdMapping                            html  
    downloadChemblDb                        html  
    downloadUniChem                         html  
    drugTargetAnnot                         html  
    drugTargetAnnotTable                    html  
    drugTargetBioactivity                   html  
    drugTargetInteraction-package           html  
    genConfig                               html  
    getDrugTarget                           html  
    getParalogs                             html  
    getSymEnsUp                             html  
    getUniprotIDs                           html  
    finding level-2 HTML links ... done

    processDrugage                          html  
    runDrugTarget_Annot_Bioassay            html  
    transformTTD                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'drugTargetInteractions' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'drugTargetInteractions' as drugTargetInteractions_1.0.2.zip
* DONE (drugTargetInteractions)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'drugTargetInteractions' successfully unpacked and MD5 sums checked

Tests output


Example timings

drugTargetInteractions.Rcheck/examples_i386/drugTargetInteractions-Ex.timings

nameusersystemelapsed
cmpIdMapping000
downloadChemblDb000
downloadUniChem2.440.453.62
drugTargetAnnot0.040.000.25
drugTargetAnnotTable44.96 4.8850.67
drugTargetBioactivity0.180.030.24
genConfig000
getDrugTarget0.070.000.08
getParalogs000
getSymEnsUp1.780.142.07
getUniprotIDs000
processDrugage35.92 0.3636.77
runDrugTarget_Annot_Bioassay0.360.050.41
transformTTD2.830.013.08

drugTargetInteractions.Rcheck/examples_x64/drugTargetInteractions-Ex.timings

nameusersystemelapsed
cmpIdMapping000
downloadChemblDb000
downloadUniChem2.590.163.36
drugTargetAnnot0.020.000.01
drugTargetAnnotTable46.42 0.6147.03
drugTargetBioactivity0.070.000.06
genConfig000
getDrugTarget0.010.000.02
getParalogs000
getSymEnsUp1.160.131.28
getUniprotIDs000
processDrugage32.78 0.3233.47
runDrugTarget_Annot_Bioassay0.960.081.03
transformTTD4.120.054.39