Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-10-13 15:05:20 -0400 (Wed, 13 Oct 2021).

CHECK results for cytomapper on tokay2

To the developers/maintainers of the cytomapper package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cytomapper.git to
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raw results

Package 434/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cytomapper 1.4.1  (landing page)
Nils Eling
Snapshot Date: 2021-10-12 04:50:13 -0400 (Tue, 12 Oct 2021)
git_url: https://git.bioconductor.org/packages/cytomapper
git_branch: RELEASE_3_13
git_last_commit: edd9a70
git_last_commit_date: 2021-05-21 05:14:02 -0400 (Fri, 21 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cytomapper
Version: 1.4.1
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cytomapper.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings cytomapper_1.4.1.tar.gz
StartedAt: 2021-10-12 21:27:03 -0400 (Tue, 12 Oct 2021)
EndedAt: 2021-10-12 22:05:46 -0400 (Tue, 12 Oct 2021)
EllapsedTime: 2323.2 seconds
RetCode: 0
Status:   OK  
CheckDir: cytomapper.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:cytomapper.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings cytomapper_1.4.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/cytomapper.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cytomapper/DESCRIPTION' ... OK
* this is package 'cytomapper' version '1.4.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cytomapper' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
plotting-param 6.56   0.03    6.59
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
plotting-param 5.67   0.03    5.71
plotCells      4.91   0.11    5.02
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

cytomapper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/cytomapper_1.4.1.tar.gz && rm -rf cytomapper.buildbin-libdir && mkdir cytomapper.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cytomapper.buildbin-libdir cytomapper_1.4.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL cytomapper_1.4.1.zip && rm cytomapper_1.4.1.tar.gz cytomapper_1.4.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 11 17.8M   11 2015k    0     0  3178k      0  0:00:05 --:--:--  0:00:05 3179k
 39 17.8M   39 7170k    0     0  4418k      0  0:00:04  0:00:01  0:00:03 4417k
 52 17.8M   52 9666k    0     0  3666k      0  0:00:04  0:00:02  0:00:02 3665k
 67 17.8M   67 11.9M    0     0  3370k      0  0:00:05  0:00:03  0:00:02 3370k
 84 17.8M   84 14.9M    0     0  3310k      0  0:00:05  0:00:04  0:00:01 3310k
100 17.8M  100 17.8M    0     0  3415k      0  0:00:05  0:00:05 --:--:-- 3447k

install for i386

* installing *source* package 'cytomapper' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cytomapper'
    finding HTML links ... done
    CytoImageList-manipulation              html  
    finding level-2 HTML links ... done

    CytoImageList-naming                    html  
    CytoImageList-subsetting                html  
    CytoImageList                           html  
    cytomapperShiny                         html  
    loadImages                              html  
    measureObjects                          html  
    pancreasImages                          html  
    pancreasMasks                           html  
    pancreasSCE                             html  
    plotCells                               html  
    plotPixels                              html  
    plotting-param                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'cytomapper' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cytomapper' as cytomapper_1.4.1.zip
* DONE (cytomapper)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'cytomapper' successfully unpacked and MD5 sums checked

Tests output

cytomapper.Rcheck/tests_i386/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(cytomapper)
Loading required package: EBImage
Loading required package: SingleCellExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following objects are masked from 'package:EBImage':

    resize, tile

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians

The following object is masked from 'package:EBImage':

    channel


Attaching package: 'cytomapper'

The following objects are masked from 'package:Biobase':

    channelNames, channelNames<-

> 
> test_check("cytomapper")
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
== Skipped tests ===============================================================
* On CRAN (5)
* empty test (5)

[ FAIL 0 | WARN 0 | SKIP 10 | PASS 2914 ]
> 
> proc.time()
   user  system elapsed 
 677.45   26.57  964.07 

cytomapper.Rcheck/tests_x64/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(cytomapper)
Loading required package: EBImage
Loading required package: SingleCellExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following objects are masked from 'package:EBImage':

    resize, tile

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians

The following object is masked from 'package:EBImage':

    channel


Attaching package: 'cytomapper'

The following objects are masked from 'package:Biobase':

    channelNames, channelNames<-

> 
> test_check("cytomapper")
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
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  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
This Font Awesome icon ('') does not exist:
* if providing a custom `html_dependency` these `name` checks can 
  be deactivated with `verify_fa = FALSE`
== Skipped tests ===============================================================
* On CRAN (5)
* empty test (5)

[ FAIL 0 | WARN 0 | SKIP 10 | PASS 2914 ]
> 
> proc.time()
   user  system elapsed 
 657.71   20.56  927.00 

Example timings

cytomapper.Rcheck/examples_i386/cytomapper-Ex.timings

nameusersystemelapsed
CytoImageList-manipulation3.370.163.60
CytoImageList-naming0.090.000.10
CytoImageList-subsetting1.280.091.38
CytoImageList0.170.000.17
cytomapperShiny000
loadImages0.400.030.44
measureObjects4.550.024.56
plotCells4.580.344.92
plotPixels2.220.112.33
plotting-param6.560.036.59

cytomapper.Rcheck/examples_x64/cytomapper-Ex.timings

nameusersystemelapsed
CytoImageList-manipulation3.880.033.91
CytoImageList-naming0.060.000.06
CytoImageList-subsetting1.140.171.34
CytoImageList0.200.000.21
cytomapperShiny000
loadImages0.520.020.53
measureObjects4.760.034.80
plotCells4.910.115.02
plotPixels3.160.033.18
plotting-param5.670.035.71