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This page was generated on 2021-09-24 15:06:06 -0400 (Fri, 24 Sep 2021).

INSTALL results for copynumber on tokay2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/copynumber.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 387/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
copynumber 1.32.0  (landing page)
Gro Nilsen
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/copynumber
git_branch: RELEASE_3_13
git_last_commit: 7a14096
git_last_commit_date: 2021-05-19 11:58:32 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: copynumber
Version: 1.32.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/copynumber_1.32.0.tar.gz && rm -rf copynumber.buildbin-libdir && mkdir copynumber.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copynumber.buildbin-libdir copynumber_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL copynumber_1.32.0.zip && rm copynumber_1.32.0.tar.gz copynumber_1.32.0.zip
StartedAt: 2021-09-23 07:31:23 -0400 (Thu, 23 Sep 2021)
EndedAt: 2021-09-23 07:32:15 -0400 (Thu, 23 Sep 2021)
EllapsedTime: 51.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/copynumber_1.32.0.tar.gz && rm -rf copynumber.buildbin-libdir && mkdir copynumber.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=copynumber.buildbin-libdir copynumber_1.32.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL copynumber_1.32.0.zip && rm copynumber_1.32.0.tar.gz copynumber_1.32.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  763k  100  763k    0     0  1697k      0 --:--:-- --:--:-- --:--:-- 1701k

install for i386

* installing *source* package 'copynumber' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'copynumber'
    finding HTML links ... done
    SNPdata                                 html  
    aspcf                                   html  
    callAberrations                         html  
    getGRangesFormat                        html  
    imputeMissing                           html  
    interpolate.pcf                         html  
    lymphoma                                html  
    micma                                   html  
    multipcf                                html  
    pcf                                     html  
    pcfPlain                                html  
    plotAberration                          html  
    plotAllele                              html  
    plotChrom                               html  
    plotCircle                              html  
    plotFreq                                html  
    plotGamma                               html  
    plotGenome                              html  
    plotHeatmap                             html  
    plotSample                              html  
    selectSegments                          html  
    subsetData                              html  
    subsetSegments                          html  
    winsorize                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'copynumber' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'copynumber' as copynumber_1.32.0.zip
* DONE (copynumber)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'copynumber' successfully unpacked and MD5 sums checked