Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-09-17 15:06:00 -0400 (Fri, 17 Sep 2021).

CHECK results for chromstaR on tokay2

To the developers/maintainers of the chromstaR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 307/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chromstaR 1.18.0  (landing page)
Aaron Taudt
Snapshot Date: 2021-09-16 04:50:11 -0400 (Thu, 16 Sep 2021)
git_url: https://git.bioconductor.org/packages/chromstaR
git_branch: RELEASE_3_13
git_last_commit: 8f44dd4
git_last_commit_date: 2021-05-19 12:21:16 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: chromstaR
Version: 1.18.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:chromstaR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings chromstaR_1.18.0.tar.gz
StartedAt: 2021-09-16 21:03:39 -0400 (Thu, 16 Sep 2021)
EndedAt: 2021-09-16 21:16:25 -0400 (Thu, 16 Sep 2021)
EllapsedTime: 766.1 seconds
RetCode: 0
Status:   OK  
CheckDir: chromstaR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:chromstaR.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings chromstaR_1.18.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/chromstaR.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'chromstaR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'chromstaR' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'chromstaR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   4.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Chromstar: multiple local function definitions for 'parallel.helper'
  with different formal arguments
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/chromstaR/libs/i386/chromstaR.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.13-bioc/R/library/chromstaR/libs/x64/chromstaR.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
combineMultivariates  27.25   0.11   28.19
enrichment_analysis   15.05   0.20   17.37
callPeaksMultivariate 13.20   0.26   14.58
callPeaksReplicates   11.92   0.21   12.84
unis2pseudomulti       8.47   0.10    8.56
changePostCutoff       7.68   0.33    8.02
combinatorialStates    7.89   0.06    7.96
Chromstar              6.99   0.42   45.31
plotGenomeBrowser      6.47   0.04    6.51
changeMaxPostCutoff    5.30   0.14    5.44
plotExpression         3.39   0.06    5.33
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                       user system elapsed
combineMultivariates  29.47   0.17   29.64
enrichment_analysis   15.64   0.29   17.68
callPeaksMultivariate 11.78   0.08   11.89
callPeaksReplicates   10.82   0.16   10.97
combinatorialStates    9.91   0.15   10.05
unis2pseudomulti       9.72   0.14    9.86
Chromstar              8.31   0.45   51.05
changePostCutoff       7.42   0.09    7.52
plotGenomeBrowser      7.25   0.01    7.27
changeMaxPostCutoff    5.72   0.05    5.76
plotExpression         3.13   0.05    5.08
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/chromstaR.Rcheck/00check.log'
for details.



Installation output

chromstaR.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/chromstaR_1.18.0.tar.gz && rm -rf chromstaR.buildbin-libdir && mkdir chromstaR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chromstaR.buildbin-libdir chromstaR_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL chromstaR_1.18.0.zip && rm chromstaR_1.18.0.tar.gz chromstaR_1.18.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 23 6686k   23 1575k    0     0  2081k      0  0:00:03 --:--:--  0:00:03 2081k
 78 6686k   78 5243k    0     0  2952k      0  0:00:02  0:00:01  0:00:01 2952k
100 6686k  100 6686k    0     0  3221k      0  0:00:02  0:00:02 --:--:-- 3222k

install for i386

* installing *source* package 'chromstaR' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_interface.cpp -o R_interface.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c densities.cpp -o densities.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.cpp -o init.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c scalehmm.cpp -o scalehmm.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utility.cpp -o utility.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o chromstaR.dll tmp.def R_interface.o densities.o init.o scalehmm.o utility.o -fopenmp -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/chromstaR.buildbin-libdir/00LOCK-chromstaR/00new/chromstaR/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'chromstaR'
    finding HTML links ... done
    Chromstar                               html  
    binReads                                html  
    finding level-2 HTML links ... done

    binned.data                             html  
    callPeaksMultivariate                   html  
    callPeaksReplicates                     html  
    callPeaksUnivariate                     html  
    callPeaksUnivariateAllChr               html  
    changeMaxPostCutoff                     html  
    changePostCutoff                        html  
    chromstaR-objects                       html  
    chromstaR-package                       html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/chromstaR.buildbin-libdir/00LOCK-chromstaR/00new/chromstaR/help/chromstaR.html
    collapseBins                            html  
    combinatorialStates                     html  
    combineMultivariates                    html  
    combinedMultiHMM                        html  
    conversion                              html  
    enrichmentAtAnnotation                  html  
    enrichment_analysis                     html  
    experiment.table                        html  
    exportFiles                             html  
    exportGRangesAsBedFile                  html  
    fixedWidthBins                          html  
    genes_rn4                               html  
    genomicFrequencies                      html  
    getCombinations                         html  
    getDistinctColors                       html  
    getStateColors                          html  
    heatmapCombinations                     html  
    heatmapCountCorrelation                 html  
    heatmapTransitionProbs                  html  
    loadHmmsFromFiles                       html  
    mergeChroms                             html  
    model.combined                          html  
    model.multivariate                      html  
    model.univariate                        html  
    multiHMM                                html  
    multivariateSegmentation                html  
    plotExpression                          html  
    plotGenomeBrowser                       html  
    plotHistogram                           html  
    plotHistograms                          html  
    plotting                                html  
    print.combinedMultiHMM                  html  
    print.multiHMM                          html  
    print.uniHMM                            html  
    readBamFileAsGRanges                    html  
    readBedFileAsGRanges                    html  
    readConfig                              html  
    readCustomBedFile                       html  
    removeCondition                         html  
    scanBinsizes                            html  
    scores                                  html  
    simulateMultivariate                    html  
    simulateReadsFromCounts                 html  
    simulateUnivariate                      html  
    state.brewer                            html  
    stateBrewer                             html  
    subsample                               html  
    transitionFrequencies                   html  
    uniHMM                                  html  
    unis2pseudomulti                        html  
    variableWidthBins                       html  
    writeConfig                             html  
    zinbinom                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'chromstaR' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c R_interface.cpp -o R_interface.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c densities.cpp -o densities.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.cpp -o init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c scalehmm.cpp -o scalehmm.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utility.cpp -o utility.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o chromstaR.dll tmp.def R_interface.o densities.o init.o scalehmm.o utility.o -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/chromstaR.buildbin-libdir/chromstaR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chromstaR' as chromstaR_1.18.0.zip
* DONE (chromstaR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'chromstaR' successfully unpacked and MD5 sums checked

Tests output

chromstaR.Rcheck/tests_i386/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(chromstaR)
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
Loading required package: ggplot2
Loading required package: chromstaRData

Please visit https://github.com/ataudt/chromstaR for the latest bugfixes and features.

> 
> test_check("chromstaR")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 44 ]
> 
> proc.time()
   user  system elapsed 
  18.78    0.89   19.67 

chromstaR.Rcheck/tests_x64/testthat.Rout


R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(chromstaR)
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
Loading required package: ggplot2
Loading required package: chromstaRData

Please visit https://github.com/ataudt/chromstaR for the latest bugfixes and features.

> 
> test_check("chromstaR")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 44 ]
> 
> proc.time()
   user  system elapsed 
  16.04    0.65   16.68 

Example timings

chromstaR.Rcheck/examples_i386/chromstaR-Ex.timings

nameusersystemelapsed
Chromstar 6.99 0.4245.31
binReads1.200.131.81
callPeaksMultivariate13.20 0.2614.58
callPeaksReplicates11.92 0.2112.84
callPeaksUnivariate2.000.062.06
changeMaxPostCutoff5.300.145.44
changePostCutoff7.680.338.02
collapseBins0.610.000.60
combinatorialStates7.890.067.96
combineMultivariates27.25 0.1128.19
conversion000
enrichment_analysis15.05 0.2017.37
experiment.table0.000.020.02
exportFiles1.440.011.45
exportGRangesAsBedFile0.980.021.00
fixedWidthBins0.110.000.11
genes_rn40.130.000.12
genomicFrequencies0.260.020.28
getCombinations0.280.010.30
getDistinctColors0.040.000.03
getStateColors0.010.000.02
heatmapCombinations0.440.020.45
heatmapCountCorrelation0.330.030.36
heatmapTransitionProbs0.340.000.34
loadHmmsFromFiles3.090.053.15
model.combined0.330.000.32
model.multivariate0.270.000.27
model.univariate0.110.000.11
multiHMM0.260.000.26
plotExpression3.390.065.33
plotGenomeBrowser6.470.046.51
plotHistogram2.760.082.85
readBamFileAsGRanges1.040.021.04
readBedFileAsGRanges2.560.082.69
readCustomBedFile4.290.064.36
removeCondition2.020.052.06
state.brewer0.010.000.01
stateBrewer0.030.000.04
transitionFrequencies0.360.010.37
unis2pseudomulti8.470.108.56
variableWidthBins2.000.102.11

chromstaR.Rcheck/examples_x64/chromstaR-Ex.timings

nameusersystemelapsed
Chromstar 8.31 0.4551.05
binReads0.940.081.01
callPeaksMultivariate11.78 0.0811.89
callPeaksReplicates10.82 0.1610.97
callPeaksUnivariate2.120.042.17
changeMaxPostCutoff5.720.055.76
changePostCutoff7.420.097.52
collapseBins0.610.000.61
combinatorialStates 9.91 0.1510.05
combineMultivariates29.47 0.1729.64
conversion000
enrichment_analysis15.64 0.2917.68
experiment.table0.010.000.02
exportFiles1.850.022.33
exportGRangesAsBedFile1.40.01.4
fixedWidthBins0.220.000.22
genes_rn40.190.000.19
genomicFrequencies0.310.000.31
getCombinations0.270.030.30
getDistinctColors0.040.000.05
getStateColors0.020.000.01
heatmapCombinations0.450.000.45
heatmapCountCorrelation1.20.01.2
heatmapTransitionProbs0.330.000.33
loadHmmsFromFiles2.370.052.42
model.combined0.270.010.28
model.multivariate0.200.020.22
model.univariate0.080.010.09
multiHMM0.200.020.22
plotExpression3.130.055.08
plotGenomeBrowser7.250.017.27
plotHistogram2.640.052.68
readBamFileAsGRanges0.730.000.74
readBedFileAsGRanges1.630.111.73
readCustomBedFile4.900.014.92
removeCondition2.410.022.43
state.brewer0.010.000.01
stateBrewer0.040.000.03
transitionFrequencies0.370.020.39
unis2pseudomulti9.720.149.86
variableWidthBins2.340.112.46