Back to Multiple platform build/check report for BioC 3.13
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-07-23 15:05:57 -0400 (Fri, 23 Jul 2021).

BUILD BIN results for ballgown on tokay2

To the developers/maintainers of the ballgown package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ballgown.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 112/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ballgown 2.24.0  (landing page)
Jack Fu
Snapshot Date: 2021-07-22 04:50:13 -0400 (Thu, 22 Jul 2021)
URL: https://git.bioconductor.org/packages/ballgown
Branch: RELEASE_3_13
Last Commit: 34829e1
Last Changed Date: 2021-05-19 12:06:23 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ballgown
Version: 2.24.0
Command: rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ballgown.buildbin-libdir ballgown_2.24.0.tar.gz
StartedAt: 2021-07-23 08:28:17 -0400 (Fri, 23 Jul 2021)
EndedAt: 2021-07-23 08:29:27 -0400 (Fri, 23 Jul 2021)
EllapsedTime: 70.5 seconds
RetCode: 0
Status:   OK  
PackageFile: ballgown_2.24.0.zip
PackageFileSize: 3.304 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ballgown.buildbin-libdir && mkdir ballgown.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ballgown.buildbin-libdir ballgown_2.24.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'ballgown' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'structure' in package 'ballgown'
** help
*** installing help indices
  converting help for package 'ballgown'
    finding HTML links ... done
    annotate_assembly                       html  
    ballgown-class                          html  
    ballgown-constructor                    html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/ballgown.buildbin-libdir/00LOCK-ballgown/00new/ballgown/help/ballgown.html
    ballgown-package                        html  
    ballgownrsem                            html  
    bg                                      html  
    checkAssembledTx                        html  
    clusterTranscripts                      html  
    collapseTranscripts                     html  
    contains                                html  
    dirs                                    html  
    eexpr                                   html  
    expr-replace                            html  
REDIRECT:topic	 expr<- -> expr-replace.html [ FAIL ]
REDIRECT:topic	 expr<-,ballgown-method -> expr-replace.html [ FAIL ]
    expr                                    html  
    exprfilter                              html  
    geneIDs                                 html  
    geneNames                               html  
    getAttributeField                       html  
    getGenes                                html  
    gexpr                                   html  
    gffRead                                 html  
    gffReadGR                               html  
    iexpr                                   html  
    indexes-replace                         html  
REDIRECT:topic	 indexes<- -> indexes-replace.html [ FAIL ]
REDIRECT:topic	 indexes<-,ballgown-method -> indexes-replace.html [ FAIL ]
    indexes                                 html  
    last                                    html  
    mergedDate                              html  
    pData-replace                           html  
REDIRECT:topic	 pData<- -> pData-replace.html [ FAIL ]
REDIRECT:topic	 pData<-,ballgown,ANY-method -> pData-replace.html [ FAIL ]
    pData                                   html  
    pctOverlap                              html  
    plotLatentTranscripts                   html  
    plotMeans                               html  
    plotTranscripts                         html  
    sampleNames                             html  
    seqnames                                html  
    stattest                                html  
    structure                               html  
    subset                                  html  
    tGene                                   html  
    texpr                                   html  
    transcriptIDs                           html  
    transcriptNames                         html  
    writeFiles                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ballgown' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ballgown' as ballgown_2.24.0.zip
* DONE (ballgown)