Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-09-13 15:06:18 -0400 (Mon, 13 Sep 2021).

BUILD BIN results for autonomics on tokay2

To the developers/maintainers of the autonomics package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/autonomics.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 102/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
autonomics 1.0.1  (landing page)
Aditya Bhagwat
Snapshot Date: 2021-09-12 04:50:10 -0400 (Sun, 12 Sep 2021)
git_url: https://git.bioconductor.org/packages/autonomics
git_branch: RELEASE_3_13
git_last_commit: 5df16f7
git_last_commit_date: 2021-05-25 07:57:21 -0400 (Tue, 25 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: autonomics
Version: 1.0.1
Command: rm -rf autonomics.buildbin-libdir && mkdir autonomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=autonomics.buildbin-libdir autonomics_1.0.1.tar.gz
StartedAt: 2021-09-13 07:34:10 -0400 (Mon, 13 Sep 2021)
EndedAt: 2021-09-13 07:35:49 -0400 (Mon, 13 Sep 2021)
EllapsedTime: 98.9 seconds
RetCode: 0
Status:   OK  
PackageFile: autonomics_1.0.1.zip
PackageFileSize: 1.786 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf autonomics.buildbin-libdir && mkdir autonomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=autonomics.buildbin-libdir autonomics_1.0.1.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'autonomics' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to '/' 
** help
*** installing help indices
  converting help for package 'autonomics'
    finding HTML links ... done
    AUTONOMICS_DATASETS                     html  
    MAXQUANT_PATTERNS_PEPCOUNTS             html  
    MAXQUANT_PATTERNS_QUANTITY              html  
    TESTS                                   html  
    add_smiles                              html  
    analysis                                html  
    analyze                                 html  
    assert_is_valid_sumexp                  html  
    biplot                                  html  
    biplot_corrections                      html  
    biplot_covariates                       html  
    center                                  html  
    contrast_subgroup_cols                  html  
    contrastdefs                            html  
    counts                                  html  
    counts2cpm                              html  
    counts2tpm                              html  
    cpm                                     html  
    create_design                           html  
    create_sfile                            html  
    default_formula                         html  
    default_sfile                           html  
    download_data                           html  
    download_gtf                            html  
    dt2mat                                  html  
    explore_imputations                     html  
    explore_transformations                 html  
    extract_features                        html  
    extract_rectangle                       html  
    fdata                                   html  
    filter_exprs_replicated_in_some_subgroup
                                            html  
    filter_features                         html  
    filter_medoid                           html  
    filter_replicated                       html  
    filter_samples                          html  
    fit_limma                               html  
    flevels                                 html  
    fnames                                  html  
    formula2str                             html  
    fvalues                                 html  
    fvars                                   html  
    guess_maxquant_quantity                 html  
    guess_sep                               html  
    halfnormimpute                          html  
    impute_systematic_nondetects            html  
    invert                                  html  
    is_imputed                              html  
    is_sig                                  html  
    limma                                   html  
    log2counts                              html  
    log2countsratios                        html  
    log2cpm                                 html  
    log2cpmratios                           html  
    log2tpm                                 html  
    log2tpmratios                           html  
    log2transform                           html  
    make_volcano_dt                         html  
    matrix2sumexp                           html  
    merge_sdata                             html  
    merge_sfile                             html  
    message_df                              html  
    occupancies                             html  
    pca                                     html  
    plot_boxplots                           html  
    plot_contrastogram                      html  
    plot_data                               html  
    plot_densities                          html  
    plot_detections                         html  
    plot_features                           html  
    plot_venn                               html  
    plot_violins                            html  
    plot_volcano                            html  
    preprocess_rnaseq_counts                html  
    proteingroups                           html  
    read_affymetrix                         html  
    read_metabolon                          html  
    read_proteingroups                      html  
    read_rectangles                         html  
    read_rnaseq_counts                      html  
    read_somascan                           html  
    rm_singleton_samples                    html  
    scaledlibsizes                          html  
    sdata                                   html  
    slevels                                 html  
    snames                                  html  
    split_by_svar                           html  
    split_extract                           html  
    standardize_maxquant_snames             html  
    subgroup_matrix                         html  
    subtract_baseline                       html  
    sumexp2mae                              html  
    sumexp_to_long_dt                       html  
    summarize_fit                           html  
    svalues                                 html  
    svars                                   html  
    tpm                                     html  
    values                                  html  
    venn_detects                            html  
    weights                                 html  
    zero_to_na                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'autonomics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'autonomics' as autonomics_1.0.1.zip
* DONE (autonomics)