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This page was generated on 2021-09-20 15:05:34 -0400 (Mon, 20 Sep 2021).

INSTALL results for XBSeq on tokay2

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raw results

Package 2025/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
XBSeq 1.24.0  (landing page)
Yuanhang Liu
Snapshot Date: 2021-09-19 04:50:10 -0400 (Sun, 19 Sep 2021)
git_url: https://git.bioconductor.org/packages/XBSeq
git_branch: RELEASE_3_13
git_last_commit: b28a2ce
git_last_commit_date: 2021-05-19 12:14:23 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: XBSeq
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/XBSeq_1.24.0.tar.gz && rm -rf XBSeq.buildbin-libdir && mkdir XBSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XBSeq.buildbin-libdir XBSeq_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL XBSeq_1.24.0.zip && rm XBSeq_1.24.0.tar.gz XBSeq_1.24.0.zip
StartedAt: 2021-09-19 09:57:41 -0400 (Sun, 19 Sep 2021)
EndedAt: 2021-09-19 09:58:56 -0400 (Sun, 19 Sep 2021)
EllapsedTime: 75.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/XBSeq_1.24.0.tar.gz && rm -rf XBSeq.buildbin-libdir && mkdir XBSeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XBSeq.buildbin-libdir XBSeq_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL XBSeq_1.24.0.zip && rm XBSeq_1.24.0.tar.gz XBSeq_1.24.0.zip
###
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install for i386

* installing *source* package 'XBSeq' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'XBSeq'
    finding HTML links ... done
    ExampleData                             html  
    MAplot                                  html  
    XBSeq-package                           html  
    XBSeq                                   html  
    XBSeqDataSet-class                      html  
    finding level-2 HTML links ... done

    XBSeqTest                               html  
    XBplot                                  html  
    apaUsage                                html  
    conditions                              html  
    counts                                  html  
    dispEst                                 html  
    dispTable                               html  
    estimateRealCount                       html  
    estimateSCV                             html  
    fitInfo                                 html  
    getSignalVars                           html  
    plotSCVEsts                             html  
** building package indices
** installing vignettes
   'XBSeq.Rmd' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
Warning: Package 'XBSeq' is deprecated and will be removed from Bioconductor
  version 3.14
** testing if installed package can be loaded from final location
Warning: Package 'XBSeq' is deprecated and will be removed from Bioconductor
  version 3.14
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'XBSeq' ...
** testing if installed package can be loaded
Warning: Package 'XBSeq' is deprecated and will be removed from Bioconductor
  version 3.14
* MD5 sums
packaged installation of 'XBSeq' as XBSeq_1.24.0.zip
* DONE (XBSeq)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'XBSeq' successfully unpacked and MD5 sums checked