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This page was generated on 2021-09-17 15:06:28 -0400 (Fri, 17 Sep 2021).

INSTALL results for ViSEAGO on tokay2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ViSEAGO.git to
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raw results

Package 2008/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ViSEAGO 1.6.0  (landing page)
Aurelien Brionne
Snapshot Date: 2021-09-16 04:50:11 -0400 (Thu, 16 Sep 2021)
git_url: https://git.bioconductor.org/packages/ViSEAGO
git_branch: RELEASE_3_13
git_last_commit: 320ba38
git_last_commit_date: 2021-05-19 12:44:50 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: ViSEAGO
Version: 1.6.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ViSEAGO_1.6.0.tar.gz && rm -rf ViSEAGO.buildbin-libdir && mkdir ViSEAGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ViSEAGO.buildbin-libdir ViSEAGO_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ViSEAGO_1.6.0.zip && rm ViSEAGO_1.6.0.tar.gz ViSEAGO_1.6.0.zip
StartedAt: 2021-09-16 09:36:19 -0400 (Thu, 16 Sep 2021)
EndedAt: 2021-09-16 09:37:45 -0400 (Thu, 16 Sep 2021)
EllapsedTime: 86.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ViSEAGO_1.6.0.tar.gz && rm -rf ViSEAGO.buildbin-libdir && mkdir ViSEAGO.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ViSEAGO.buildbin-libdir ViSEAGO_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ViSEAGO_1.6.0.zip && rm ViSEAGO_1.6.0.tar.gz ViSEAGO_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  1 6604k    1   98k    0     0   519k      0  0:00:12 --:--:--  0:00:12  520k
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100 6604k  100 6604k    0     0  2650k      0  0:00:02  0:00:02 --:--:-- 2650k

install for i386

* installing *source* package 'ViSEAGO' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO'
Note: possible error in 'listEnsembl(host = host, ': unused argument (host = host) 
** help
*** installing help indices
  converting help for package 'ViSEAGO'
    finding HTML links ... done
    Bioconductor2GO                         html  
    Custom2GO                               html  
    Ensembl2GO                              html  
    EntrezGene2GO                           html  
    EntrezGene_orthologs                    html  
    GO_SS-class                             html  
    GO_clusters-class                       html  
    GOclusters_heatmap-methods              html  
    GOcount-methods                         html  
    GOterms_heatmap-methods                 html  
    MDSplot-methods                         html  
    Uniprot2GO                              html  
    Upset-methods                           html  
    ViSEAGO                                 html  
    annotate-methods                        html  
    available_organisms-methods             html  
    build_GO_SS-methods                     html  
    clusters_cor-methods                    html  
    compare_clusters-methods                html  
    compute_SS_distances-methods            html  
    create_topGOdata-methods                html  
    enrich_GO_terms-class                   html  
    fgsea-class                             html  
    gene2GO-class                           html  
    genomic_ressource-class                 html  
    merge_enrich_terms-methods              html  
    myGOs                                   html  
    overLapper                              html  
    finding level-2 HTML links ... done

    pkgdiagram                              html  
    runfgsea-methods                        html  
    show_heatmap-methods                    html  
    show_table-methods                      html  
    taxonomy                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ViSEAGO' ...
** testing if installed package can be loaded
Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO'
* MD5 sums
packaged installation of 'ViSEAGO' as ViSEAGO_1.6.0.zip
* DONE (ViSEAGO)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'ViSEAGO' successfully unpacked and MD5 sums checked