Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-07-23 15:06:23 -0400 (Fri, 23 Jul 2021).

CHECK results for TCGAbiolinksGUI on tokay2

To the developers/maintainers of the TCGAbiolinksGUI package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TCGAbiolinksGUI.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1900/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TCGAbiolinksGUI 1.18.0  (landing page)
Tiago C. Silva
Snapshot Date: 2021-07-22 04:50:13 -0400 (Thu, 22 Jul 2021)
URL: https://git.bioconductor.org/packages/TCGAbiolinksGUI
Branch: RELEASE_3_13
Last Commit: 8315ea1
Last Changed Date: 2021-05-19 12:25:56 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: TCGAbiolinksGUI
Version: 1.18.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TCGAbiolinksGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings TCGAbiolinksGUI_1.18.0.tar.gz
StartedAt: 2021-07-23 06:50:52 -0400 (Fri, 23 Jul 2021)
EndedAt: 2021-07-23 06:59:20 -0400 (Fri, 23 Jul 2021)
EllapsedTime: 507.6 seconds
RetCode: 0
Status:   OK  
CheckDir: TCGAbiolinksGUI.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:TCGAbiolinksGUI.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings TCGAbiolinksGUI_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/TCGAbiolinksGUI.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TCGAbiolinksGUI/DESCRIPTION' ... OK
* this is package 'TCGAbiolinksGUI' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TCGAbiolinksGUI' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'DT'
  All declared Imports should be used.
Package in Depends field not imported from: 'TCGAbiolinksGUI.data'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'C:/Users/biocbuild/bbs-3.13-bioc/meat/TCGAbiolinksGUI.Rcheck/00check.log'
for details.



Installation output

TCGAbiolinksGUI.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/TCGAbiolinksGUI_1.18.0.tar.gz && rm -rf TCGAbiolinksGUI.buildbin-libdir && mkdir TCGAbiolinksGUI.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAbiolinksGUI.buildbin-libdir TCGAbiolinksGUI_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL TCGAbiolinksGUI_1.18.0.zip && rm TCGAbiolinksGUI_1.18.0.tar.gz TCGAbiolinksGUI_1.18.0.zip
###
##############################################################################
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 7157k    0 21387    0     0   150k      0  0:00:47 --:--:--  0:00:47  151k
 37 7157k   37 2649k    0     0  2315k      0  0:00:03  0:00:01  0:00:02 2316k
 83 7157k   83 5994k    0     0  2791k      0  0:00:02  0:00:02 --:--:-- 2791k
100 7157k  100 7157k    0     0  2964k      0  0:00:02  0:00:02 --:--:-- 2963k

install for i386

* installing *source* package 'TCGAbiolinksGUI' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TCGAbiolinksGUI'
    finding HTML links ... done
    TCGAbiolinksGUI                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TCGAbiolinksGUI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAbiolinksGUI' as TCGAbiolinksGUI_1.18.0.zip
* DONE (TCGAbiolinksGUI)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'TCGAbiolinksGUI' successfully unpacked and MD5 sums checked

Tests output


Example timings

TCGAbiolinksGUI.Rcheck/examples_i386/TCGAbiolinksGUI-Ex.timings

nameusersystemelapsed
TCGAbiolinksGUI000

TCGAbiolinksGUI.Rcheck/examples_x64/TCGAbiolinksGUI-Ex.timings

nameusersystemelapsed
TCGAbiolinksGUI000