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This page was generated on 2021-09-15 15:06:17 -0400 (Wed, 15 Sep 2021).

INSTALL results for SeqArray on machv2

To the developers/maintainers of the SeqArray package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SeqArray.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1731/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.32.0  (landing page)
Xiuwen Zheng
Snapshot Date: 2021-09-14 04:50:06 -0400 (Tue, 14 Sep 2021)
git_url: https://git.bioconductor.org/packages/SeqArray
git_branch: RELEASE_3_13
git_last_commit: 8fa3c99
git_last_commit_date: 2021-05-19 11:58:07 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: SeqArray
Version: 1.32.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
StartedAt: 2021-09-14 08:26:25 -0400 (Tue, 14 Sep 2021)
EndedAt: 2021-09-14 08:27:07 -0400 (Tue, 14 Sep 2021)
EllapsedTime: 41.9 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SeqArray
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘SeqArray’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ConvToGDS.cpp -o ConvToGDS.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c FileMerge.cpp -o FileMerge.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c GetData.cpp -o GetData.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Index.cpp -o Index.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c LinkSNPRelate.cpp -o LinkSNPRelate.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c Methods.cpp -o Methods.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_SeqArray.c -o R_SeqArray.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ReadBySample.cpp -o ReadBySample.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ReadByUnit.cpp -o ReadByUnit.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c ReadByVariant.cpp -o ReadByVariant.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c SeqArray.cpp -o SeqArray.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c pkg_test.cpp -o pkg_test.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c samtools_ext.c -o samtools_ext.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c vectorization.c -o vectorization.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvToGDS.o ConvVCF2GDS.o FileMerge.o GetData.o Index.o LinkSNPRelate.o Methods.o R_SeqArray.o ReadBySample.o ReadByUnit.o ReadByVariant.o SeqArray.o pkg_test.o samtools_ext.o vectorization.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-SeqArray/00new/SeqArray/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SeqArray)