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This page was generated on 2021-09-17 15:06:20 -0400 (Fri, 17 Sep 2021).

BUILD BIN results for RMassBank on tokay2

To the developers/maintainers of the RMassBank package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RMassBank.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1594/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RMassBank 3.2.0  (landing page)
RMassBank at Eawag
Snapshot Date: 2021-09-16 04:50:11 -0400 (Thu, 16 Sep 2021)
git_url: https://git.bioconductor.org/packages/RMassBank
git_branch: RELEASE_3_13
git_last_commit: ba135d3
git_last_commit_date: 2021-05-19 11:53:19 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: RMassBank
Version: 3.2.0
Command: rm -rf RMassBank.buildbin-libdir && mkdir RMassBank.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=RMassBank.buildbin-libdir RMassBank_3.2.0.tar.gz
StartedAt: 2021-09-17 11:35:29 -0400 (Fri, 17 Sep 2021)
EndedAt: 2021-09-17 11:36:36 -0400 (Fri, 17 Sep 2021)
EllapsedTime: 67.1 seconds
RetCode: 0
Status:   OK  
PackageFile: RMassBank_3.2.0.zip
PackageFileSize: 2.27 MiB

Command output

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###
### Running command:
###
###   rm -rf RMassBank.buildbin-libdir && mkdir RMassBank.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=RMassBank.buildbin-libdir RMassBank_3.2.0.tar.gz
###
##############################################################################
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* installing *source* package 'RMassBank' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RMassBank'
    finding HTML links ... done
    CTS.externalIdSubset                    html  
    CTS.externalIdTypes                     html  
    RmbDefaultSettings                      html  
    RmbSettings                             html  
    add.formula                             html  
    addMB                                   html  
    addPeaks                                html  
    addPeaksManually                        html  
    addProperty                             html  
    aggregateSpectra                        html  
    analyzeMsMs                             html  
    annotator.default                       html  
    archiveResults                          html  
    checkIsotopes                           html  
    checkSpectra                            html  
    cleanElnoise                            html  
    combineMultiplicities                   html  
    createMolfile                           html  
    dbe                                     html  
    deprofile                               html  
    dot-buildRecord.RmbSpectraSet           html  
    dot-parseTitleString                    html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpAjDhAB/R.INSTALL97447f9b11a2/RMassBank/man/dot-parseTitleString.Rd:38: missing link 'compileRecord'
    dot-updateObject.RmbSpectrum2.formulaSource
                                            html  
    exportMassbank                          html  
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpAjDhAB/R.INSTALL97447f9b11a2/RMassBank/man/exportMassbank.Rd:11: missing link 'compileRecord'
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpAjDhAB/R.INSTALL97447f9b11a2/RMassBank/man/exportMassbank.Rd:52: missing link 'compileRecord'
    fillback                                html  
    filterLowaccResults                     html  
    filterMultiplicity                      html  
    filterPeakSatellites                    html  
    filterPeaksMultiplicity                 html  
    findEIC                                 html  
    findMass                                html  
    findMsMsHR                              html  
    findMsMsHR.direct                       html  
    findMsMsHR.ticms2                       html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/RMassBank.buildbin-libdir/00LOCK-RMassBank/00new/RMassBank/help/findMsMsHR.ticMS2.html
    findMsMsHRperxcms                       html  
    findMz                                  html  
    findMz.formula                          html  
    findProgress                            html  
    flatten                                 html  
    formulastring.to.list                   html  
    gatherData                              html  
    gatherDataBabel                         html  
    gatherDataUnknown                       html  
    gatherPubChem                           html  
    getAnalyticalInfo                       html  
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpAjDhAB/R.INSTALL97447f9b11a2/RMassBank/man/getAnalyticalInfo.Rd:71: missing link 'compileRecord'
    getCSID                                 html  
    getCactus                               html  
    getCompTox                              html  
    getCtsKey                               html  
    getCtsRecord                            html  
    getData                                 html  
    getMolecule                             html  
    getPcId                                 html  
    is.valid.formula                        html  
    loadInfolists                           html  
    loadList                                html  
    makeMollist                             html  
    makePeaksCache                          html  
    makeRecalibration                       html  
    mbWorkflow                              html  
    mbWorkspace-class                       html  
    mergePeaks.df                           html  
    msmsRead.RAW                            html  
    msmsRead                                html  
    msmsWorkflow                            html  
    msmsWorkspace-class                     html  
    newMbWorkspace                          html  
    newMsmsWorkspace                        html  
    order.formula                           html  
    parseMassBank                           html  
    parseMbRecord                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/RMassBank.buildbin-libdir/00LOCK-RMassBank/00new/RMassBank/help/parseMassBank.html
    peaksMatched                            html  
    peaksUnmatched                          html  
    plotMbWorkspaces                        html  
    plotRecalibration                       html  
    ppm                                     html  
    problematicPeaks                        html  
    processProblematicPeaks                 html  
    progressBarHook                         html  
    reanalyzeFailpeaks                      html  
    recalibrate                             html  
    recalibrate.addMS1data                  html  
    selectPeaks                             html  
    selectSpectra                           html  
    setData                                 html  
    smiles2mass                             html  
    spectraCount                            html  
    to.limits.rcdk                          html  
    toMassbank                              html  
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpAjDhAB/R.INSTALL97447f9b11a2/RMassBank/man/toMassbank.Rd:79: missing link 'compileRecord'
    toRMB                                   html  
    updateSettings                          html  
    validate                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'RMassBank' as RMassBank_3.2.0.zip
* DONE (RMassBank)