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This page was generated on 2021-07-30 15:06:02 -0400 (Fri, 30 Jul 2021).

BUILD BIN results for OrganismDbi on tokay2

To the developers/maintainers of the OrganismDbi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OrganismDbi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1325/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OrganismDbi 1.34.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-07-29 04:50:02 -0400 (Thu, 29 Jul 2021)
URL: https://git.bioconductor.org/packages/OrganismDbi
Branch: RELEASE_3_13
Last Commit: 253c4ae
Last Changed Date: 2021-05-19 11:53:46 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: OrganismDbi
Version: 1.34.0
Command: rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.34.0.tar.gz
StartedAt: 2021-07-30 10:48:42 -0400 (Fri, 30 Jul 2021)
EndedAt: 2021-07-30 10:49:42 -0400 (Fri, 30 Jul 2021)
EllapsedTime: 59.4 seconds
RetCode: 0
Status:   OK  
PackageFile: OrganismDbi_1.34.0.zip
PackageFileSize: 674.6 KiB

Command output

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### Running command:
###
###   rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.34.0.tar.gz
###
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install for i386

* installing *source* package 'OrganismDbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OrganismDbi'
    finding HTML links ... done
    OrganismDb                              html  
REDIRECT:topic	 class:MultiDb -> OrganismDb.html [ FAIL ]
REDIRECT:topic	 class:OrganismDb -> OrganismDb.html [ FAIL ]
REDIRECT:topic	 TxDb<- -> OrganismDb.html [ FAIL ]
REDIRECT:topic	 TxDb<-,OrganismDb-method -> OrganismDb.html [ FAIL ]
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpcrFIwr/R.INSTALL838cc1d61d0/OrganismDbi/man/OrganismDb.Rd:191: missing link 'GenomeInfoDb'
    coordinate-mapping-method               html  
    makeOrganismDbFromBiomart               html  
    makeOrganismDbFromTxDb                  html  
    makeOrganismDbFromUCSC                  html  
    makeOrganismPackage                     html  
    rangeBasedAccessors                     html  
REDIRECT:topic	 isActiveSeq<-,MultiDb-method -> rangeBasedAccessors.html [ FAIL ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OrganismDbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OrganismDbi' as OrganismDbi_1.34.0.zip
* DONE (OrganismDbi)