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This page was generated on 2021-09-20 15:05:21 -0400 (Mon, 20 Sep 2021).

BUILD BIN results for OmaDB on tokay2

To the developers/maintainers of the OmaDB package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmaDB.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1295/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OmaDB 2.8.0  (landing page)
Klara Kaleb , Adrian Altenhoff
Snapshot Date: 2021-09-19 04:50:10 -0400 (Sun, 19 Sep 2021)
git_url: https://git.bioconductor.org/packages/OmaDB
git_branch: RELEASE_3_13
git_last_commit: 73c1e16
git_last_commit_date: 2021-05-19 12:32:07 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: OmaDB
Version: 2.8.0
Command: rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.8.0.tar.gz
StartedAt: 2021-09-20 10:17:51 -0400 (Mon, 20 Sep 2021)
EndedAt: 2021-09-20 10:19:26 -0400 (Mon, 20 Sep 2021)
EllapsedTime: 95.1 seconds
RetCode: 0
Status:   OK  
PackageFile: OmaDB_2.8.0.zip
PackageFileSize: 242.9 KiB

Command output

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###
### Running command:
###
###   rm -rf OmaDB.buildbin-libdir && mkdir OmaDB.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmaDB.buildbin-libdir OmaDB_2.8.0.tar.gz
###
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install for i386

* installing *source* package 'OmaDB' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OmaDB'
    finding HTML links ... done
    OmaDB-deprecated                        html  
    OmaDB-package                           html  
    annotateSequence                        html  
    cash-.omadb_obj                         html  
    formatTopGO                             html  
    getAnnotation-deprecated                html  
    getAttribute                            html  
    getData-deprecated                      html  
    getGenome                               html  
    getGenomeAlignment-deprecated           html  
    getGenomePairs                          html  
    getHOG                                  html  
    getLocus                                html  
    getOMAGroup                             html  
    getObjectAttributes                     html  
    getProtein                              html  
    getTaxonomy                             html  
    getTopGO                                html  
    getTree                                 html  
    getVersion                              html  
    getXref-deprecated                      html  
    group                                   html  
    hog                                     html  
    mapSequence                             html  
    orthologs                               html  
    pairs                                   html  
    protein                                 html  
    resolveURL                              html  
    searchProtein                           html  
    sequence_annotation                     html  
    sequence_map                            html  
    setAPI                                  html  
    taxonomy                                html  
    xref                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OmaDB' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmaDB' as OmaDB_2.8.0.zip
* DONE (OmaDB)