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This page was generated on 2021-07-21 15:05:02 -0400 (Wed, 21 Jul 2021).

BUILD results for MineICA on nebbiolo1

To the developers/maintainers of the MineICA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MineICA.git to
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raw results

Package 1138/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MineICA 1.32.0  (landing page)
Anne Biton
Snapshot Date: 2021-07-20 04:50:13 -0400 (Tue, 20 Jul 2021)
URL: https://git.bioconductor.org/packages/MineICA
Branch: RELEASE_3_13
Last Commit: def84c7
Last Changed Date: 2021-05-19 11:57:33 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: MineICA
Version: 1.32.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MineICA
StartedAt: 2021-07-20 07:42:19 -0400 (Tue, 20 Jul 2021)
EndedAt: 2021-07-20 07:43:33 -0400 (Tue, 20 Jul 2021)
EllapsedTime: 73.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MineICA
###
##############################################################################
##############################################################################


* checking for file ‘MineICA/DESCRIPTION’ ... OK
* preparing ‘MineICA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MineICA.Rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Category
Loading required package: stats4
Loading required package: AnnotationDbi
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:plyr’:

    rename

The following objects are masked from ‘package:base’:

    I, expand.grid, unname


Attaching package: ‘IRanges’

The following object is masked from ‘package:plyr’:

    desc

Loading required package: Matrix

Attaching package: ‘Matrix’

The following object is masked from ‘package:S4Vectors’:

    expand

Loading required package: graph

Attaching package: ‘graph’

The following object is masked from ‘package:plyr’:

    join



Attaching package: ‘GOstats’

The following object is masked from ‘package:AnnotationDbi’:

    makeGOGraph

Loading required package: limma

Attaching package: ‘limma’

The following object is masked from ‘package:BiocGenerics’:

    plotMA

Package 'mclust' version 5.4.7
Type 'citation("mclust")' for citing this R package in publications.

Attaching package: ‘igraph’

The following objects are masked from ‘package:graph’:

    degree, edges, intersection, union

The following object is masked from ‘package:IRanges’:

    union

The following object is masked from ‘package:S4Vectors’:

    union

The following objects are masked from ‘package:BiocGenerics’:

    normalize, path, union

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

Loading required package: grid

Attaching package: ‘Rgraphviz’

The following objects are masked from ‘package:IRanges’:

    from, to

The following objects are masked from ‘package:S4Vectors’:

    from, to

Loading required package: XML

Attaching package: ‘XML’

The following object is masked from ‘package:graph’:

    addNode


Attaching package: ‘annotate’

The following object is masked from ‘package:Rgraphviz’:

    toFile


Attaching package: ‘gtools’

The following object is masked from ‘package:igraph’:

    permute

Loading required package: Hmisc
Loading required package: lattice
Loading required package: survival
Loading required package: Formula

Attaching package: ‘Hmisc’

The following object is masked from ‘package:AnnotationDbi’:

    contents

The following objects are masked from ‘package:xtable’:

    label, label<-

The following objects are masked from ‘package:plyr’:

    is.discrete, summarize

The following object is masked from ‘package:Biobase’:

    contents

The following objects are masked from ‘package:base’:

    format.pval, units

Loading required package: fastICA
Loading required package: JADE
Number of selected genes is 10000

Max IQR is 0.89

Loading required package: org.Hs.eg.db


Ensembl site unresponsive, trying useast mirror

Error: processing vignette 'MineICA.Rnw' failed with diagnostics:
 chunk 10 (label = mart) 
Error in curl::curl_fetch_memory(url, handle = handle) : 
  SSL certificate problem: unable to get local issuer certificate

--- failed re-building ‘MineICA.Rnw’

SUMMARY: processing the following file failed:
  ‘MineICA.Rnw’

Error: Vignette re-building failed.
Execution halted