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This page was generated on 2021-07-30 15:06:00 -0400 (Fri, 30 Jul 2021).

BUILD BIN results for MSGFplus on tokay2

To the developers/maintainers of the MSGFplus package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSGFplus.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1199/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSGFplus 1.26.0  (landing page)
Thomas Lin Pedersen
Snapshot Date: 2021-07-29 04:50:02 -0400 (Thu, 29 Jul 2021)
URL: https://git.bioconductor.org/packages/MSGFplus
Branch: RELEASE_3_13
Last Commit: c0c3ae3
Last Changed Date: 2021-05-19 12:08:05 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: MSGFplus
Version: 1.26.0
Command: rm -rf MSGFplus.buildbin-libdir && mkdir MSGFplus.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=MSGFplus.buildbin-libdir MSGFplus_1.26.0.tar.gz
StartedAt: 2021-07-30 10:34:02 -0400 (Fri, 30 Jul 2021)
EndedAt: 2021-07-30 10:35:05 -0400 (Fri, 30 Jul 2021)
EllapsedTime: 62.6 seconds
RetCode: 0
Status:   OK  
PackageFile: MSGFplus_1.26.0.zip
PackageFileSize: 410.6 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MSGFplus.buildbin-libdir && mkdir MSGFplus.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch --build --library=MSGFplus.buildbin-libdir MSGFplus_1.26.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'MSGFplus' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'MSGFplus'
    finding HTML links ... done
    MSGFplus-package                        html  
    chargeRange                             html  
REDIRECT:topic	 chargeRange<- -> chargeRange.html [ FAIL ]
REDIRECT:topic	 chargeRange<-,msgfPar,numeric-method -> chargeRange.html [ FAIL ]
REDIRECT:topic	 chargeRange<-,msgfPar,msgfParChargeRange-method -> chargeRange.html [ FAIL ]
    db                                      html  
REDIRECT:topic	 db<- -> db.html [ FAIL ]
REDIRECT:topic	 db<-,msgfPar,character-method -> db.html [ FAIL ]
    enzyme                                  html  
REDIRECT:topic	 enzyme<- -> enzyme.html [ FAIL ]
REDIRECT:topic	 enzyme<-,msgfPar,numeric-method -> enzyme.html [ FAIL ]
REDIRECT:topic	 enzyme<-,msgfPar,character-method -> enzyme.html [ FAIL ]
REDIRECT:topic	 enzyme<-,msgfPar,msgfParEnzyme-method -> enzyme.html [ FAIL ]
    fragmentation                           html  
REDIRECT:topic	 fragmentation<- -> fragmentation.html [ FAIL ]
REDIRECT:topic	 fragmentation<-,msgfPar,numeric-method -> fragmentation.html [ FAIL ]
REDIRECT:topic	 fragmentation<-,msgfPar,character-method -> fragmentation.html [ FAIL ]
REDIRECT:topic	 fragmentation<-,msgfPar,msgfParFragmentation-method -> fragmentation.html [ FAIL ]
    getMSGFpar                              html  
    instrument                              html  
REDIRECT:topic	 instrument<- -> instrument.html [ FAIL ]
REDIRECT:topic	 instrument<-,msgfPar,numeric-method -> instrument.html [ FAIL ]
REDIRECT:topic	 instrument<-,msgfPar,character-method -> instrument.html [ FAIL ]
REDIRECT:topic	 instrument<-,msgfPar,msgfParInstrument-method -> instrument.html [ FAIL ]
    isotopeError                            html  
REDIRECT:topic	 isotopeError<- -> isotopeError.html [ FAIL ]
REDIRECT:topic	 isotopeError<-,msgfPar,numeric-method -> isotopeError.html [ FAIL ]
REDIRECT:topic	 isotopeError<-,msgfPar,msgfParIsotopeError-method -> isotopeError.html [ FAIL ]
    lengthRange                             html  
REDIRECT:topic	 lengthRange<- -> lengthRange.html [ FAIL ]
REDIRECT:topic	 lengthRange<-,msgfPar,numeric-method -> lengthRange.html [ FAIL ]
REDIRECT:topic	 lengthRange<-,msgfPar,msgfParLengthRange-method -> lengthRange.html [ FAIL ]
    matches                                 html  
REDIRECT:topic	 matches<- -> matches.html [ FAIL ]
REDIRECT:topic	 matches<-,msgfPar,numeric-method -> matches.html [ FAIL ]
REDIRECT:topic	 matches<-,msgfPar,msgfParMatches-method -> matches.html [ FAIL ]
    mods                                    html  
REDIRECT:topic	 mods<- -> mods.html [ FAIL ]
REDIRECT:topic	 nMod<- -> mods.html [ FAIL ]
REDIRECT:topic	 mods<-,msgfPar,msgfParModificationList-method -> mods.html [ FAIL ]
REDIRECT:topic	 nMod<-,msgfPar,numeric-method -> mods.html [ FAIL ]
    msgfAsync-class                         html  
    msgfPar-class                           html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpQbQNOB/R.INSTALLdb844c52e3/MSGFplus/man/msgfPar-class.Rd:121: missing link 'msgfParGUI'
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpQbQNOB/R.INSTALLdb844c52e3/MSGFplus/man/msgfPar-class.Rd:148: missing link 'msgfParGUI'
    msgfPar                                 html  
    msgfParChargeRange-class                html  
    msgfParEnzyme-class                     html  
    msgfParFragmentation-class              html  
    msgfParFromID                           html  
    msgfParInstrument-class                 html  
    msgfParIsotopeError-class               html  
    msgfParLengthRange-class                html  
    msgfParMatches-class                    html  
    msgfParModification-class               html  
    msgfParModificationList-class           html  
REDIRECT:topic	 [[<-,msgfParModificationList,numeric,missing,msgfParModification-method -> msgfParModificationList-class.html [ FAIL ]
    msgfParNtt-class                        html  
    msgfParProtocol-class                   html  
    msgfParTda-class                        html  
    msgfParTolerance-class                  html  
    ntt                                     html  
REDIRECT:topic	 ntt<- -> ntt.html [ FAIL ]
REDIRECT:topic	 ntt<-,msgfPar,numeric-method -> ntt.html [ FAIL ]
REDIRECT:topic	 ntt<-,msgfPar,msgfParNtt-method -> ntt.html [ FAIL ]
    protocol                                html  
REDIRECT:topic	 protocol<- -> protocol.html [ FAIL ]
REDIRECT:topic	 protocol<-,msgfPar,numeric-method -> protocol.html [ FAIL ]
REDIRECT:topic	 protocol<-,msgfPar,character-method -> protocol.html [ FAIL ]
REDIRECT:topic	 protocol<-,msgfPar,msgfParProtocol-method -> protocol.html [ FAIL ]
    runMSGF                                 html  
    tda                                     html  
REDIRECT:topic	 tda<- -> tda.html [ FAIL ]
REDIRECT:topic	 tda<-,msgfPar,logical-method -> tda.html [ FAIL ]
REDIRECT:topic	 tda<-,msgfPar,msgfParTda-method -> tda.html [ FAIL ]
    tolerance                               html  
REDIRECT:topic	 tolerance<- -> tolerance.html [ FAIL ]
REDIRECT:topic	 toleranceRange<- -> tolerance.html [ FAIL ]
REDIRECT:topic	 toleranceUnit<- -> tolerance.html [ FAIL ]
REDIRECT:topic	 toleranceRange<-,msgfPar,numeric-method -> tolerance.html [ FAIL ]
REDIRECT:topic	 toleranceUnit<-,msgfPar,character-method -> tolerance.html [ FAIL ]
REDIRECT:topic	 tolerance<-,msgfPar,character-method -> tolerance.html [ FAIL ]
REDIRECT:topic	 tolerance<-,msgfPar,msgfParTolerance-method -> tolerance.html [ FAIL ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'MSGFplus' as MSGFplus_1.26.0.zip
* DONE (MSGFplus)