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This page was generated on 2021-08-02 15:05:16 -0400 (Mon, 02 Aug 2021).

INSTALL results for KEGGgraph on tokay2

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raw results

Package 967/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGgraph 1.52.0  (landing page)
Jitao David Zhang
Snapshot Date: 2021-08-01 04:50:10 -0400 (Sun, 01 Aug 2021)
URL: https://git.bioconductor.org/packages/KEGGgraph
Branch: RELEASE_3_13
Last Commit: 295f4c0
Last Changed Date: 2021-05-19 11:42:28 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: KEGGgraph
Version: 1.52.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/KEGGgraph_1.52.0.tar.gz && rm -rf KEGGgraph.buildbin-libdir && mkdir KEGGgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KEGGgraph.buildbin-libdir KEGGgraph_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL KEGGgraph_1.52.0.zip && rm KEGGgraph_1.52.0.tar.gz KEGGgraph_1.52.0.zip
StartedAt: 2021-08-01 07:49:20 -0400 (Sun, 01 Aug 2021)
EndedAt: 2021-08-01 07:52:34 -0400 (Sun, 01 Aug 2021)
EllapsedTime: 194.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/KEGGgraph_1.52.0.tar.gz && rm -rf KEGGgraph.buildbin-libdir && mkdir KEGGgraph.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=KEGGgraph.buildbin-libdir KEGGgraph_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL KEGGgraph_1.52.0.zip && rm KEGGgraph_1.52.0.tar.gz KEGGgraph_1.52.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 58  930k   58  541k    0     0  3094k      0 --:--:-- --:--:-- --:--:-- 3095k
100  930k  100  930k    0     0  4627k      0 --:--:-- --:--:-- --:--:-- 4628k

install for i386

* installing *source* package 'KEGGgraph' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'KEGGgraph'
    finding HTML links ... done
    KEGGEdge-class                          html  
REDIRECT:topic	 entryID<-,KEGGEdge-method -> KEGGEdge-class.html [ FAIL ]
    KEGGEdgeSubType-class                   html  
    KEGGEdgeSubtype                         html  
    KEGGEdgeType                            html  
    KEGGGraphics-class                      html  
    KEGGGroup-class                         html  
    KEGGNode-class                          html  
REDIRECT:topic	 name<-,KEGGNode-method -> KEGGNode-class.html [ FAIL ]
REDIRECT:topic	 name<- -> KEGGNode-class.html [ FAIL ]
REDIRECT:topic	 entryID<- -> KEGGNode-class.html [ FAIL ]
REDIRECT:topic	 entryID<-,KEGGNode-method -> KEGGNode-class.html [ FAIL ]
    KEGGNodeType                            html  
    KEGGPATHID2NAME                         html  
    KEGGPathway-class                       html  
REDIRECT:topic	 edges<- -> KEGGPathway-class.html [ FAIL ]
REDIRECT:topic	 edges<-,KEGGPathway-method -> KEGGPathway-class.html [ FAIL ]
REDIRECT:topic	 nodes<-,KEGGPathway,ANY-method -> KEGGPathway-class.html [ FAIL ]
    KEGGPathwayInfo-class                   html  
    KEGGReaction-class                      html  
    KEGGpathway2Graph                       html  
    KEGGpathway2reactionGraph               html  
    expandKEGGNode                          html  
    expandKEGGPathway                       html  
    getDisplayName-methods                  html  
    getEntryID-methods                      html  
    getKEGGID-methods                       html  
    getKEGGgeneLink-methods                 html  
    getKEGGnodeData                         html  
    getKGMLurl                              html  
    getName-methods                         html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/KEGGgraph.buildbin-libdir/00LOCK-KEGGgraph/00new/KEGGgraph/help/getName,KEGGEdgeSubtype-method.html
    getNamedElement                         html  
    getPathwayInfo-methods                  html  
    getReactions-methods                    html  
    getRgraphvizEdgeNames                   html  
    getSubtype-methods                      html  
    getTitle-methods                        html  
    getType-methods                         html  
    getValue-methods                        html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/KEGGgraph.buildbin-libdir/00LOCK-KEGGgraph/00new/KEGGgraph/help/getValue,KEGGEdgeSubtype-method.html
    graphDensity                            html  
    isHomoList                              html  
    kgmlFileName2PathwayName                html  
    mergeGraphs                             html  
    mergeKEGGgraphs                         html  
    neighborhood                            html  
    parseEntry                              html  
    parseGraphics                           html  
    parseKGML                               html  
    parseKGML2DataFrame                     html  
    parseKGML2Graph                         html  
    parseKGMLexpandMaps                     html  
    parsePathwayInfo                        html  
    parseReaction                           html  
    parseRelation                           html  
    parseSubType                            html  
    plotKEGGgraph                           html  
    pvalue2asterisk                         html  
    queryKEGGsubgraph                       html  
    randomSubGraph                          html  
    splitKEGGgroup                          html  
    subGraphByNodeType                      html  
    subKEGGgraph                            html  
    subtypeDisplay-methods                  html  
    top                                     html  
    translateKEGGID2GeneID                  html  
    translateKEGGgraph                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'KEGGgraph' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGgraph' as KEGGgraph_1.52.0.zip
* DONE (KEGGgraph)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'KEGGgraph' successfully unpacked and MD5 sums checked