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This page was generated on 2021-09-13 15:06:27 -0400 (Mon, 13 Sep 2021).

INSTALL results for GenomicDataCommons on tokay2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicDataCommons.git to
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raw results

Package 740/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicDataCommons 1.16.0  (landing page)
Sean Davis
Snapshot Date: 2021-09-12 04:50:10 -0400 (Sun, 12 Sep 2021)
git_url: https://git.bioconductor.org/packages/GenomicDataCommons
git_branch: RELEASE_3_13
git_last_commit: d614d6e
git_last_commit_date: 2021-05-19 12:27:00 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    ERROR    OK  
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: GenomicDataCommons
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GenomicDataCommons_1.16.0.tar.gz && rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GenomicDataCommons_1.16.0.zip && rm GenomicDataCommons_1.16.0.tar.gz GenomicDataCommons_1.16.0.zip
StartedAt: 2021-09-12 09:40:14 -0400 (Sun, 12 Sep 2021)
EndedAt: 2021-09-12 09:41:36 -0400 (Sun, 12 Sep 2021)
EllapsedTime: 82.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GenomicDataCommons_1.16.0.tar.gz && rm -rf GenomicDataCommons.buildbin-libdir && mkdir GenomicDataCommons.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GenomicDataCommons.buildbin-libdir GenomicDataCommons_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GenomicDataCommons_1.16.0.zip && rm GenomicDataCommons_1.16.0.tar.gz GenomicDataCommons_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  537k  100  537k    0     0  1382k      0 --:--:-- --:--:-- --:--:-- 1386k

install for i386

* installing *source* package 'GenomicDataCommons' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GenomicDataCommons'
    finding HTML links ... done
    GenomicDataCommons                      html  
    aggregations                            html  
    available_expand                        html  
    available_fields                        html  
    available_values                        html  
    constants                               html  
    count                                   html  
    default_fields                          html  
    dot-htseq_importer                      html  
    entity_name                             html  
    expand                                  html  
    faceting                                html  
    field_description                       html  
    filtering                               html  
    gdc_cache                               html  
    gdc_client                              html  
    gdc_clinical                            html  
    gdc_rnaseq                              html  
    gdc_token                               html  
    gdcdata                                 html  
    grep_fields                             html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpiOPQ0X/R.INSTALL232c47f5514c/GenomicDataCommons/man/grep_fields.Rd:10: missing link '.gdc_entities'
    id_field                                html  
    ids                                     html  
    make_filter                             html  
    manifest                                html  
    mapping                                 html  
    query                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpiOPQ0X/R.INSTALL232c47f5514c/GenomicDataCommons/man/query.Rd:46: missing link 'facets'
Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpiOPQ0X/R.INSTALL232c47f5514c/GenomicDataCommons/man/query.Rd:53: missing link 'available_expands'
    readDNAcopy                             html  
    readHTSeqFile                           html  
    response                                html  
    results                                 html  
    results_all                             html  
    select                                  html  
    slicing                                 html  
    status                                  html  
    transfer                                html  
    write_manifest                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GenomicDataCommons' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicDataCommons' as GenomicDataCommons_1.16.0.zip
* DONE (GenomicDataCommons)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GenomicDataCommons' successfully unpacked and MD5 sums checked