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This page was generated on 2021-09-17 15:06:37 -0400 (Fri, 17 Sep 2021).

BUILD BIN results for GeneGeneInteR on machv2

To the developers/maintainers of the GeneGeneInteR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneGeneInteR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 716/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneGeneInteR 1.18.0  (landing page)
Mathieu Emily
Snapshot Date: 2021-09-16 04:50:11 -0400 (Thu, 16 Sep 2021)
git_url: https://git.bioconductor.org/packages/GeneGeneInteR
git_branch: RELEASE_3_13
git_last_commit: c3d7539
git_last_commit_date: 2021-05-19 12:21:57 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GeneGeneInteR
Version: 1.18.0
Command: rm -rf GeneGeneInteR.buildbin-libdir && mkdir GeneGeneInteR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneGeneInteR_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneGeneInteR.buildbin-libdir
StartedAt: 2021-09-17 02:38:47 -0400 (Fri, 17 Sep 2021)
EndedAt: 2021-09-17 02:39:52 -0400 (Fri, 17 Sep 2021)
EllapsedTime: 64.9 seconds
RetCode: 0
Status:   OK  
PackageFile: GeneGeneInteR_1.18.0.tgz
PackageFileSize: 1.148 MiB

Command output

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### Running command:
###
###   rm -rf GeneGeneInteR.buildbin-libdir && mkdir GeneGeneInteR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneGeneInteR_1.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneGeneInteR.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneGeneInteR.buildbin-libdir GeneGeneInteR_1.18.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneGeneInteR’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c chclust.cpp -o chclust.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GeneGeneInteR.so chclust.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/GeneGeneInteR.buildbin-libdir/00LOCK-GeneGeneInteR/00new/GeneGeneInteR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneGeneInteR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneGeneInteR.buildbin-libdir/GeneGeneInteR/libs/GeneGeneInteR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "GeneGeneInteR.buildbin-libdir/GeneGeneInteR/libs/GeneGeneInteR.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "GeneGeneInteR.buildbin-libdir/GeneGeneInteR/libs/GeneGeneInteR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "GeneGeneInteR.buildbin-libdir/GeneGeneInteR/libs/GeneGeneInteR.so"