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This page was generated on 2021-07-30 15:05:55 -0400 (Fri, 30 Jul 2021).

INSTALL results for GSEABase on tokay2

To the developers/maintainers of the GSEABase package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSEABase.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 819/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GSEABase 1.54.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-07-29 04:50:02 -0400 (Thu, 29 Jul 2021)
URL: https://git.bioconductor.org/packages/GSEABase
Branch: RELEASE_3_13
Last Commit: 5b59f70
Last Changed Date: 2021-05-19 11:39:15 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GSEABase
Version: 1.54.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GSEABase_1.54.0.tar.gz && rm -rf GSEABase.buildbin-libdir && mkdir GSEABase.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSEABase.buildbin-libdir GSEABase_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GSEABase_1.54.0.zip && rm GSEABase_1.54.0.tar.gz GSEABase_1.54.0.zip
StartedAt: 2021-07-29 09:40:44 -0400 (Thu, 29 Jul 2021)
EndedAt: 2021-07-29 09:42:01 -0400 (Thu, 29 Jul 2021)
EllapsedTime: 77.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GSEABase_1.54.0.tar.gz && rm -rf GSEABase.buildbin-libdir && mkdir GSEABase.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GSEABase.buildbin-libdir GSEABase_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GSEABase_1.54.0.zip && rm GSEABase_1.54.0.tar.gz GSEABase_1.54.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 74257  100 74257    0     0   721k      0 --:--:-- --:--:-- --:--:--  725k

install for i386

* installing *source* package 'GSEABase' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GSEABase'
    finding HTML links ... done
    CollectionType-class                    html  
REDIRECT:topic	 |,CollectionType,CollectionType-method -> CollectionType-class.html [ FAIL ]
REDIRECT:topic	 |,CollectionIdType,CollectionIdType-method -> CollectionType-class.html [ FAIL ]
    CollectionType-constructors             html  
    GSEABase-package                        html  
    GeneColorSet-class                      html  
REDIRECT:topic	 |,GeneColorSet,GeneColorSet-method -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 |,GeneColorSet,character-method -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 coloring<-,GeneColorSet,data.frame-method -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 geneColor<-,GeneColorSet,factor-method -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 phenotypeColor<-,GeneColorSet,factor-method -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 phenotype<-,GeneColorSet,character-method -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 coloring<- -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 geneColor<- -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 phenotype<- -> GeneColorSet-class.html [ FAIL ]
REDIRECT:topic	 phenotypeColor<- -> GeneColorSet-class.html [ FAIL ]
    GeneColorSet-methods                    html  
    GeneIdentifierType-class                html  
REDIRECT:topic	 annotation<-,GeneIdentifierType,character-method -> GeneIdentifierType-class.html [ FAIL ]
    GeneIdentifierType-constructors         html  
    GeneSet-class                           html  
REDIRECT:topic	 |,GeneSet,GeneSet-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 |,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 collectionType<-,GeneSet,CollectionType-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 contributor<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 creationDate<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 description<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 geneIds<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 longDescription<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 organism<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 pubMedIds<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 setIdentifier<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 setName<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 geneIdType<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 geneIdType<-,GeneSet,GeneIdentifierType-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 setVersion<-,GeneSet,Versions-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 urls<-,GeneSet,character-method -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 collectionType<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/GSEABase.buildbin-libdir/00LOCK-GSEABase/00new/GSEABase/help/collectionType.html
REDIRECT:topic	 contributor<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 creationDate<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 geneIds<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 geneIdType<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 longDescription<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 organism<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 setIdentifier<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 setName<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 setVersion<- -> GeneSet-class.html [ FAIL ]
REDIRECT:topic	 urls<- -> GeneSet-class.html [ FAIL ]
    GeneSet-methods                         html  
    GeneSetCollection-class                 html  
REDIRECT:topic	 geneIds<-,GeneSetCollection,list-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 |,GeneSetCollection,GeneSetCollection-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 |,GeneSetCollection,ANY-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 |,ANY,GeneSetCollection-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 [<-,GeneSetCollection,ANY,ANY,ANY-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 [<-,GeneSetCollection,ANY,ANY,GeneSet-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 [<-,GeneSetCollection,character,ANY,GeneSet-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 [[<-,GeneSetCollection,ANY,ANY,ANY-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 [[<-,GeneSetCollection,numeric,ANY,GeneSet-method -> GeneSetCollection-class.html [ FAIL ]
REDIRECT:topic	 [[<-,GeneSetCollection,character,ANY,GeneSet-method -> GeneSetCollection-class.html [ FAIL ]
    GeneSetCollection-methods               html  
    OBOCollection-class                     html  
    details-methods                         html  
    getOBOCollection                        html  
    getObjects                              html  
    goSlim-methods                          html  
    incidence-methods                       html  
    mapIdentifiers-methods                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GSEABase' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSEABase' as GSEABase_1.54.0.zip
* DONE (GSEABase)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GSEABase' successfully unpacked and MD5 sums checked