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This page was generated on 2021-08-02 15:05:44 -0400 (Mon, 02 Aug 2021).

BUILD BIN results for GOSim on machv2

To the developers/maintainers of the GOSim package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOSim.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 791/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOSim 1.30.0  (landing page)
Holger Froehlich
Snapshot Date: 2021-08-01 04:50:10 -0400 (Sun, 01 Aug 2021)
URL: https://git.bioconductor.org/packages/GOSim
Branch: RELEASE_3_13
Last Commit: cd2c2c0
Last Changed Date: 2021-05-19 12:00:43 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GOSim
Version: 1.30.0
Command: rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir
StartedAt: 2021-08-02 02:01:11 -0400 (Mon, 02 Aug 2021)
EndedAt: 2021-08-02 02:01:58 -0400 (Mon, 02 Aug 2021)
EllapsedTime: 46.6 seconds
RetCode: 0
Status:   OK  
PackageFile: GOSim_1.30.0.tgz
PackageFileSize: 535.6 KiB

Command output

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###
### Running command:
###
###   rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GOSim.buildbin-libdir GOSim_1.30.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GOSim’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -fPIC  -Wall -g -O2  -c OAWrapper.cpp -o OAWrapper.o
Loading required package: Rcpp
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c hungarian2.c -o hungarian2.o
Loading required package: Rcpp
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GOSim.so OAWrapper.o hungarian2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
Loading required package: Rcpp
installing to /Users/biocbuild/bbs-3.13-bioc/meat/GOSim.buildbin-libdir/00LOCK-GOSim/00new/GOSim/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GOSim)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GOSim.buildbin-libdir/GOSim/libs/GOSim.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "GOSim.buildbin-libdir/GOSim/libs/GOSim.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "GOSim.buildbin-libdir/GOSim/libs/GOSim.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "GOSim.buildbin-libdir/GOSim/libs/GOSim.so"