Back to Multiple platform build/check report for BioC 3.13
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-09-27 15:06:56 -0400 (Mon, 27 Sep 2021).

BUILD BIN results for GENESIS on machv2

To the developers/maintainers of the GENESIS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GENESIS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 726/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GENESIS 2.22.2  (landing page)
Stephanie M. Gogarten
Snapshot Date: 2021-09-26 04:50:10 -0400 (Sun, 26 Sep 2021)
git_url: https://git.bioconductor.org/packages/GENESIS
git_branch: RELEASE_3_13
git_last_commit: df77222
git_last_commit_date: 2021-06-16 02:13:52 -0400 (Wed, 16 Jun 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GENESIS
Version: 2.22.2
Command: rm -rf GENESIS.buildbin-libdir && mkdir GENESIS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GENESIS_2.22.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GENESIS.buildbin-libdir
StartedAt: 2021-09-27 02:28:19 -0400 (Mon, 27 Sep 2021)
EndedAt: 2021-09-27 02:29:23 -0400 (Mon, 27 Sep 2021)
EllapsedTime: 64.1 seconds
RetCode: 0
Status:   OK  
PackageFile: GENESIS_2.22.2.tgz
PackageFileSize: 3.923 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf GENESIS.buildbin-libdir && mkdir GENESIS.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GENESIS_2.22.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GENESIS.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GENESIS.buildbin-libdir GENESIS_2.22.2.tar.gz'
>>>>>>> 

* installing *source* package ‘GENESIS’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fht.c -o fht.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GENESIS.so fht.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/GENESIS.buildbin-libdir/00LOCK-GENESIS/00new/GENESIS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GENESIS)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GENESIS.buildbin-libdir/GENESIS/libs/GENESIS.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "GENESIS.buildbin-libdir/GENESIS/libs/GENESIS.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "GENESIS.buildbin-libdir/GENESIS/libs/GENESIS.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "GENESIS.buildbin-libdir/GENESIS/libs/GENESIS.so"