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This page was generated on 2021-09-22 15:05:15 -0400 (Wed, 22 Sep 2021).

INSTALL results for GA4GHclient on tokay2

To the developers/maintainers of the GA4GHclient package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GA4GHclient.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 682/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GA4GHclient 1.16.0  (landing page)
Welliton Souza
Snapshot Date: 2021-09-21 04:50:12 -0400 (Tue, 21 Sep 2021)
git_url: https://git.bioconductor.org/packages/GA4GHclient
git_branch: RELEASE_3_13
git_last_commit: d3644e7
git_last_commit_date: 2021-05-19 12:26:45 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GA4GHclient
Version: 1.16.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GA4GHclient_1.16.0.tar.gz && rm -rf GA4GHclient.buildbin-libdir && mkdir GA4GHclient.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GA4GHclient.buildbin-libdir GA4GHclient_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GA4GHclient_1.16.0.zip && rm GA4GHclient_1.16.0.tar.gz GA4GHclient_1.16.0.zip
StartedAt: 2021-09-21 10:32:06 -0400 (Tue, 21 Sep 2021)
EndedAt: 2021-09-21 10:33:25 -0400 (Tue, 21 Sep 2021)
EllapsedTime: 79.6 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GA4GHclient_1.16.0.tar.gz && rm -rf GA4GHclient.buildbin-libdir && mkdir GA4GHclient.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GA4GHclient.buildbin-libdir GA4GHclient_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GA4GHclient_1.16.0.zip && rm GA4GHclient_1.16.0.tar.gz GA4GHclient_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 23  190k   23 45927    0     0   292k      0 --:--:-- --:--:-- --:--:--  293k
100  190k  100  190k    0     0   793k      0 --:--:-- --:--:-- --:--:--  791k

install for i386

* installing *source* package 'GA4GHclient' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient'
** help
*** installing help indices
  converting help for package 'GA4GHclient'
    finding HTML links ... done
    GA4GHclient-package                     html  
    HGVSnames                               html  
    getBiosample                            html  
    finding level-2 HTML links ... done

    getCallSet                              html  
    getDataset                              html  
    getExpressionLevel                      html  
    getFeature                              html  
    getFeatureSet                           html  
    getIndividual                           html  
    getReadGroupSet                         html  
    getReference                            html  
    getReferenceSet                         html  
    getRnaQuantification                    html  
    getRnaQuantificationSet                 html  
    getVariant                              html  
    getVariantAnnotationSet                 html  
    getVariantSet                           html  
    listReferenceBases                      html  
    makeVCFFromGA4GHResponse                html  
    makeVCFHeaderFromGA4GHResponse          html  
    searchBiosamples                        html  
    searchCallSets                          html  
    searchDatasets                          html  
    searchExpressionLevels                  html  
    searchFeatureSets                       html  
    searchFeatures                          html  
    searchIndividuals                       html  
    searchPhenotypeAssociationSets          html  
    searchPhenotypeAssociations             html  
    searchReadGroupSets                     html  
    searchReads                             html  
    searchReferenceSets                     html  
    searchReferences                        html  
    searchRnaQuantificationSets             html  
    searchRnaQuantifications                html  
    searchVariantAnnotationSets             html  
    searchVariantAnnotations                html  
    searchVariantSets                       html  
    searchVariants                          html  
    searchVariantsByGRanges                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient'
** testing if installed package can be loaded from final location
No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GA4GHclient' ...
** testing if installed package can be loaded
No methods found in package 'BiocGenerics' for request: 'lengths' when loading 'GA4GHclient'
* MD5 sums
packaged installation of 'GA4GHclient' as GA4GHclient_1.16.0.zip
* DONE (GA4GHclient)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GA4GHclient' successfully unpacked and MD5 sums checked