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This page was generated on 2021-10-13 15:05:51 -0400 (Wed, 13 Oct 2021).

BUILD BIN results for FastqCleaner on machv2

To the developers/maintainers of the FastqCleaner package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FastqCleaner.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 618/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FastqCleaner 1.10.0  (landing page)
Leandro Roser
Snapshot Date: 2021-10-12 04:50:13 -0400 (Tue, 12 Oct 2021)
git_url: https://git.bioconductor.org/packages/FastqCleaner
git_branch: RELEASE_3_13
git_last_commit: 6704c61
git_last_commit_date: 2021-05-19 12:36:03 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FastqCleaner
Version: 1.10.0
Command: rm -rf FastqCleaner.buildbin-libdir && mkdir FastqCleaner.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FastqCleaner_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FastqCleaner.buildbin-libdir
StartedAt: 2021-10-13 02:10:16 -0400 (Wed, 13 Oct 2021)
EndedAt: 2021-10-13 02:11:27 -0400 (Wed, 13 Oct 2021)
EllapsedTime: 70.2 seconds
RetCode: 0
Status:   OK  
PackageFile: FastqCleaner_1.10.0.tgz
PackageFileSize: 3.542 MiB

Command output

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###
### Running command:
###
###   rm -rf FastqCleaner.buildbin-libdir && mkdir FastqCleaner.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh FastqCleaner_1.10.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R FastqCleaner.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=FastqCleaner.buildbin-libdir FastqCleaner_1.10.0.tar.gz'
>>>>>>> 

* installing *source* package ‘FastqCleaner’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c cpp_GC_content.cpp -o cpp_GC_content.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c cpp_base_content.cpp -o cpp_base_content.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c cpp_check_quality_threshold.cpp -o cpp_check_quality_threshold.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c cpp_create_stringvec.cpp -o cpp_create_stringvec.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c cpp_which_true.cpp -o cpp_which_true.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o FastqCleaner.so RcppExports.o cpp_GC_content.o cpp_base_content.o cpp_check_quality_threshold.o cpp_create_stringvec.o cpp_which_true.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/FastqCleaner.buildbin-libdir/00LOCK-FastqCleaner/00new/FastqCleaner/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FastqCleaner)


>>>>>>> 
>>>>>>> FIXING LINKS FOR FastqCleaner.buildbin-libdir/FastqCleaner/libs/FastqCleaner.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "FastqCleaner.buildbin-libdir/FastqCleaner/libs/FastqCleaner.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "FastqCleaner.buildbin-libdir/FastqCleaner/libs/FastqCleaner.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "FastqCleaner.buildbin-libdir/FastqCleaner/libs/FastqCleaner.so"