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This page was generated on 2021-07-30 15:05:52 -0400 (Fri, 30 Jul 2021).

INSTALL results for EventPointer on tokay2

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raw results

Package 600/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EventPointer 3.0.0  (landing page)
Juan A. Ferrer-Bonsoms
Snapshot Date: 2021-07-29 04:50:02 -0400 (Thu, 29 Jul 2021)
URL: https://git.bioconductor.org/packages/EventPointer
Branch: RELEASE_3_13
Last Commit: e4f2123
Last Changed Date: 2021-05-19 12:26:09 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: EventPointer
Version: 3.0.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/EventPointer_3.0.0.tar.gz && rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EventPointer.buildbin-libdir EventPointer_3.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL EventPointer_3.0.0.zip && rm EventPointer_3.0.0.tar.gz EventPointer_3.0.0.zip
StartedAt: 2021-07-29 10:54:40 -0400 (Thu, 29 Jul 2021)
EndedAt: 2021-07-29 10:56:19 -0400 (Thu, 29 Jul 2021)
EllapsedTime: 99.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/EventPointer_3.0.0.tar.gz && rm -rf EventPointer.buildbin-libdir && mkdir EventPointer.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EventPointer.buildbin-libdir EventPointer_3.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL EventPointer_3.0.0.zip && rm EventPointer_3.0.0.tar.gz EventPointer_3.0.0.zip
###
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install for i386

* installing *source* package 'EventPointer' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c dgl.c -o dgl.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c params.c -o params.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pgl.c -o pgl.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c qdgl.c -o qdgl.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c qgl.c -o qgl.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c rgl.c -o rgl.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o EventPointer.dll tmp.def dgl.o params.o pgl.o qdgl.o qgl.o rgl.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/EventPointer.buildbin-libdir/00LOCK-EventPointer/00new/EventPointer/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EventPointer'
    finding HTML links ... done
    AllEvents_RNASeq                        html  
    AllEvents_RNASeq_MP                     html  
    ArrayDatamultipath                      html  
    ArraysData                              html  
    CDFfromGTF                              html  
    CDFfromGTF_Multipath                    html  
    CreateExSmatrix                         html  
    EventDetection                          html  
    EventDetectionMultipath                 html  
    EventDetection_transcriptome            html  
    EventPointer                            html  
    EventPointer_Bootstraps                 html  
    EventPointer_IGV                        html  
    EventPointer_RNASeq                     html  
    EventPointer_RNASeq_IGV                 html  
    EventPointer_RNASeq_TranRef             html  
    EventPointer_RNASeq_TranRef_IGV         html  
    EventXtrans                             html  
    FindPrimers                             html  
    Fit                                     html  
    GetPSI_FromTranRef                      html  
    InternalFunctions                       html  
    MyPrimers                               html  
    MyPrimers_taqman                        html  
    PSI_Statistic                           html  
    PSIss                                   html  
    PrepareBam_EP                           html  
    Protein_Domain_Enrichment               html  
    ResulTable                              html  
    SF_Prediction                           html  
    SG_RNASeq                               html  
    TxD                                     html  
    getbootstrapdata                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EventPointer' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c dgl.c -o dgl.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c params.c -o params.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pgl.c -o pgl.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c qdgl.c -o qdgl.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c qgl.c -o qgl.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c rgl.c -o rgl.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o EventPointer.dll tmp.def dgl.o params.o pgl.o qdgl.o qgl.o rgl.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/EventPointer.buildbin-libdir/EventPointer/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EventPointer' as EventPointer_3.0.0.zip
* DONE (EventPointer)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'EventPointer' successfully unpacked and MD5 sums checked