Back to Multiple platform build/check report for BioC 3.13
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This page was generated on 2021-07-21 15:05:20 -0400 (Wed, 21 Jul 2021).

CHECK results for EBSEA on tokay2

To the developers/maintainers of the EBSEA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBSEA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 550/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
EBSEA 1.20.0  (landing page)
Arfa Mehmood
Snapshot Date: 2021-07-20 04:50:13 -0400 (Tue, 20 Jul 2021)
URL: https://git.bioconductor.org/packages/EBSEA
Branch: RELEASE_3_13
Last Commit: 72eef5e
Last Changed Date: 2021-05-19 12:19:28 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: EBSEA
Version: 1.20.0
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EBSEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings EBSEA_1.20.0.tar.gz
StartedAt: 2021-07-20 23:23:13 -0400 (Tue, 20 Jul 2021)
EndedAt: 2021-07-20 23:27:53 -0400 (Tue, 20 Jul 2021)
EllapsedTime: 279.7 seconds
RetCode: 0
Status:   OK  
CheckDir: EBSEA.Rcheck
Warnings: 0

Command output

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EBSEA.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings EBSEA_1.20.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/EBSEA.Rcheck'
* using R version 4.1.0 (2021-05-18)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'EBSEA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'EBSEA' version '1.20.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'EBSEA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
EBSEA 10.53   0.67   11.24
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
EBSEA          11.19   0.08   11.27
visualizeGenes  5.22   0.01    5.23
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

EBSEA.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/EBSEA_1.20.0.tar.gz && rm -rf EBSEA.buildbin-libdir && mkdir EBSEA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EBSEA.buildbin-libdir EBSEA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL EBSEA_1.20.0.zip && rm EBSEA_1.20.0.tar.gz EBSEA_1.20.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 16748  100 16748    0     0   210k      0 --:--:-- --:--:-- --:--:--  209k

install for i386

* installing *source* package 'EBSEA' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'EBSEA'
    finding HTML links ... done
    EBSEA                                   html  
    exonCounts                              html  
    filterCounts                            html  
    visualizeGenes                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'EBSEA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'EBSEA' as EBSEA_1.20.0.zip
* DONE (EBSEA)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'EBSEA' successfully unpacked and MD5 sums checked

Tests output


Example timings

EBSEA.Rcheck/examples_i386/EBSEA-Ex.timings

nameusersystemelapsed
EBSEA10.53 0.6711.24
filterCounts0.020.000.01
visualizeGenes4.380.004.37

EBSEA.Rcheck/examples_x64/EBSEA-Ex.timings

nameusersystemelapsed
EBSEA11.19 0.0811.27
filterCounts0.020.020.03
visualizeGenes5.220.015.23