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This page was generated on 2021-09-20 15:05:11 -0400 (Mon, 20 Sep 2021).

INSTALL results for DirichletMultinomial on tokay2

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DirichletMultinomial.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 507/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DirichletMultinomial 1.34.0  (landing page)
Martin Morgan
Snapshot Date: 2021-09-19 04:50:10 -0400 (Sun, 19 Sep 2021)
git_url: https://git.bioconductor.org/packages/DirichletMultinomial
git_branch: RELEASE_3_13
git_last_commit: 75a199d
git_last_commit_date: 2021-05-19 11:52:24 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DirichletMultinomial
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DirichletMultinomial_1.34.0.tar.gz && rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DirichletMultinomial_1.34.0.zip && rm DirichletMultinomial_1.34.0.tar.gz DirichletMultinomial_1.34.0.zip
StartedAt: 2021-09-19 07:32:30 -0400 (Sun, 19 Sep 2021)
EndedAt: 2021-09-19 07:33:33 -0400 (Sun, 19 Sep 2021)
EllapsedTime: 62.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DirichletMultinomial_1.34.0.tar.gz && rm -rf DirichletMultinomial.buildbin-libdir && mkdir DirichletMultinomial.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DirichletMultinomial.buildbin-libdir DirichletMultinomial_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DirichletMultinomial_1.34.0.zip && rm DirichletMultinomial_1.34.0.tar.gz DirichletMultinomial_1.34.0.zip
###
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install for i386

* installing *source* package 'DirichletMultinomial' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c dirichlet_fit.c -o dirichlet_fit.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/i386/include    -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function 'hessian':
dirichlet_fit_main.c:391:34: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
             adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha;
                          ~~~~~~~~^~~
dirichlet_fit_main.c:393:33: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
             adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha;
                         ~~~~~~~~^~~
dirichlet_fit_main.c: In function 'dirichlet_fit_main':
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
     int signum, status;
                 ^~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/i386/lib -lgsl -lgslcblas -lm -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DirichletMultinomial.buildbin-libdir/00LOCK-DirichletMultinomial/00new/DirichletMultinomial/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DirichletMultinomial'
    finding HTML links ... done
    DMN-class                               html  
    DMNGroup-class                          html  
    finding level-2 HTML links ... done

    DirichletMultinomial-package            html  
    cvdmngroup                              html  
    dataobjects                             html  
    dmn                                     html  
    dmngroup                                html  
    fitted                                  html  
    heatmapdmn                              html  
    roc                                     html  
    util                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DirichletMultinomial' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c R_init_DirichletMultinomial.c -o R_init_DirichletMultinomial.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c dirichlet_fit.c -o dirichlet_fit.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I/src/include -I/x64/include    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c dirichlet_fit_main.c -o dirichlet_fit_main.o
dirichlet_fit_main.c: In function 'hessian':
dirichlet_fit_main.c:391:34: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
             adCJK0[j] += adPi[i] * n ? gsl_sf_psi(adAlpha[j] + n) : dPsiAlpha;
                          ~~~~~~~~^~~
dirichlet_fit_main.c:393:33: warning: '*' in boolean context, suggest '&&' instead [-Wint-in-bool-context]
             adCJK[j] += adPi[i] * n ? gsl_sf_psi_1(adAlpha[j] + n): dPsi1Alpha;
                         ~~~~~~~~^~~
dirichlet_fit_main.c: In function 'dirichlet_fit_main':
dirichlet_fit_main.c:542:17: warning: variable 'status' set but not used [-Wunused-but-set-variable]
     int signum, status;
                 ^~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o DirichletMultinomial.dll tmp.def R_init_DirichletMultinomial.o dirichlet_fit.o dirichlet_fit_main.o -L/x64/lib -lgsl -lgslcblas -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DirichletMultinomial.buildbin-libdir/DirichletMultinomial/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DirichletMultinomial' as DirichletMultinomial_1.34.0.zip
* DONE (DirichletMultinomial)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'DirichletMultinomial' successfully unpacked and MD5 sums checked