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This page was generated on 2021-09-20 15:05:39 -0400 (Mon, 20 Sep 2021).

BUILD BIN results for DelayedArray on machv2

To the developers/maintainers of the DelayedArray package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DelayedArray.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 469/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DelayedArray 0.18.0  (landing page)
Hervé Pagès
Snapshot Date: 2021-09-19 04:50:10 -0400 (Sun, 19 Sep 2021)
git_url: https://git.bioconductor.org/packages/DelayedArray
git_branch: RELEASE_3_13
git_last_commit: 4e18a4f
git_last_commit_date: 2021-05-19 12:24:43 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: DelayedArray
Version: 0.18.0
Command: rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DelayedArray_0.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DelayedArray.buildbin-libdir
StartedAt: 2021-09-20 02:08:28 -0400 (Mon, 20 Sep 2021)
EndedAt: 2021-09-20 02:09:39 -0400 (Mon, 20 Sep 2021)
EllapsedTime: 70.2 seconds
RetCode: 0
Status:   OK  
PackageFile: DelayedArray_0.18.0.tgz
PackageFileSize: 2.373 MiB

Command output

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###
### Running command:
###
###   rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DelayedArray_0.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DelayedArray.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DelayedArray.buildbin-libdir DelayedArray_0.18.0.tar.gz'
>>>>>>> 

* installing *source* package ‘DelayedArray’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_init_DelayedArray.c -o R_init_DelayedArray.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c abind.c -o abind.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c array_selection.c -o array_selection.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c compress_atomic_vector.c -o compress_atomic_vector.o
compress_atomic_vector.c:66:9: warning: variable 'ans' is uninitialized when used here [-Wuninitialized]
        return ans;
               ^~~
compress_atomic_vector.c:64:10: note: initialize the variable 'ans' to silence this warning
        SEXP ans;
                ^
                 = NULL
compress_atomic_vector.c:73:9: warning: variable 'ans' is uninitialized when used here [-Wuninitialized]
        return ans;
               ^~~
compress_atomic_vector.c:71:10: note: initialize the variable 'ans' to silence this warning
        SEXP ans;
                ^
                 = NULL
compress_atomic_vector.c:85:9: warning: variable 'ans' is uninitialized when used here [-Wuninitialized]
        return ans;
               ^~~
compress_atomic_vector.c:83:10: note: initialize the variable 'ans' to silence this warning
        SEXP ans;
                ^
                 = NULL
compress_atomic_vector.c:92:9: warning: variable 'ans' is uninitialized when used here [-Wuninitialized]
        return ans;
               ^~~
compress_atomic_vector.c:90:10: note: initialize the variable 'ans' to silence this warning
        SEXP ans;
                ^
                 = NULL
4 warnings generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/S4Vectors/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c sparseMatrix_utils.c -o sparseMatrix_utils.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o sparseMatrix_utils.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/DelayedArray.buildbin-libdir/00LOCK-DelayedArray/00new/DelayedArray/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘rowsum’ in package ‘DelayedArray’
Creating a new generic function for ‘aperm’ in package ‘DelayedArray’
Creating a new generic function for ‘apply’ in package ‘DelayedArray’
Creating a new generic function for ‘sweep’ in package ‘DelayedArray’
Creating a new generic function for ‘scale’ in package ‘DelayedArray’
Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’
Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DelayedArray)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DelayedArray.buildbin-libdir/DelayedArray/libs/DelayedArray.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "DelayedArray.buildbin-libdir/DelayedArray/libs/DelayedArray.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "DelayedArray.buildbin-libdir/DelayedArray/libs/DelayedArray.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "DelayedArray.buildbin-libdir/DelayedArray/libs/DelayedArray.so"