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This page was generated on 2021-09-24 15:06:07 -0400 (Fri, 24 Sep 2021).

INSTALL results for DegNorm on tokay2

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raw results

Package 465/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DegNorm 1.2.0  (landing page)
Ji-Ping Wang
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/DegNorm
git_branch: RELEASE_3_13
git_last_commit: 4194859
git_last_commit_date: 2021-05-19 12:52:58 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DegNorm
Version: 1.2.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DegNorm_1.2.0.tar.gz && rm -rf DegNorm.buildbin-libdir && mkdir DegNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DegNorm.buildbin-libdir DegNorm_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DegNorm_1.2.0.zip && rm DegNorm_1.2.0.tar.gz DegNorm_1.2.0.zip
StartedAt: 2021-09-23 09:56:12 -0400 (Thu, 23 Sep 2021)
EndedAt: 2021-09-23 09:57:57 -0400 (Thu, 23 Sep 2021)
EllapsedTime: 104.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DegNorm_1.2.0.tar.gz && rm -rf DegNorm.buildbin-libdir && mkdir DegNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DegNorm.buildbin-libdir DegNorm_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DegNorm_1.2.0.zip && rm DegNorm_1.2.0.tar.gz DegNorm_1.2.0.zip
###
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100 3313k  100 3313k    0     0  1230k      0  0:00:02  0:00:02 --:--:-- 1230k

install for i386

* installing *source* package 'DegNorm' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/IRanges/include'   -I"c:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/IRanges/include'   -I"c:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c degnormCPP.cpp -o degnormCPP.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o DegNorm.dll tmp.def RcppExports.o degnormCPP.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DegNorm.buildbin-libdir/00LOCK-DegNorm/00new/DegNorm/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'DegNorm'
    finding HTML links ... done
    DegNorm-package                         html  
    PlotFunctions                           html  
    coverage_res_chr21                      html  
    degnorm                                 html  
    plot_coverage                           html  
    read_coverage                           html  
    read_coverage_batch                     html  
    res_DegNorm_chr21                       html  
    summary_CoverageClass                   html  
    summary_DegNormClass                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'DegNorm' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/IRanges/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/S4Vectors/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/IRanges/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c degnormCPP.cpp -o degnormCPP.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o DegNorm.dll tmp.def RcppExports.o degnormCPP.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DegNorm.buildbin-libdir/DegNorm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DegNorm' as DegNorm_1.2.0.zip
* DONE (DegNorm)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'DegNorm' successfully unpacked and MD5 sums checked