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This page was generated on 2021-09-24 15:06:06 -0400 (Fri, 24 Sep 2021).

INSTALL results for CrispRVariants on tokay2

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raw results

Package 411/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CrispRVariants 1.20.0  (landing page)
Helen Lindsay
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/CrispRVariants
git_branch: RELEASE_3_13
git_last_commit: 6789cce
git_last_commit_date: 2021-05-19 12:17:13 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: CrispRVariants
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CrispRVariants_1.20.0.tar.gz && rm -rf CrispRVariants.buildbin-libdir && mkdir CrispRVariants.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CrispRVariants.buildbin-libdir CrispRVariants_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CrispRVariants_1.20.0.zip && rm CrispRVariants_1.20.0.tar.gz CrispRVariants_1.20.0.zip
StartedAt: 2021-09-23 08:45:59 -0400 (Thu, 23 Sep 2021)
EndedAt: 2021-09-23 08:47:31 -0400 (Thu, 23 Sep 2021)
EllapsedTime: 92.7 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CrispRVariants_1.20.0.tar.gz && rm -rf CrispRVariants.buildbin-libdir && mkdir CrispRVariants.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CrispRVariants.buildbin-libdir CrispRVariants_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CrispRVariants_1.20.0.zip && rm CrispRVariants_1.20.0.tar.gz CrispRVariants_1.20.0.zip
###
##############################################################################
##############################################################################


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100 1409k  100 1409k    0     0  1946k      0 --:--:-- --:--:-- --:--:-- 1946k

install for i386

* installing *source* package 'CrispRVariants' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CrispRVariants'
    finding HTML links ... done
    CrisprRun-class                         html  
    CrisprSet-class                         html  
    abifToFastq                             html  
    addClipped                              html  
    addCodonFrame                           html  
    alleleLabelsHelpers                     html  
    alleles                                 html  
    alns                                    html  
    annotateGenePlot                        html  
    arrangePlots                            html  
    barplotAlleleFreqs                      html  
    collapsePairs                           html  
    consensusSeqs                           html  
    dispatchDots                            html  
    excludeFromBam                          html  
    explodeCigarOpCombs                     html  
    findChimeras                            html  
    findSNVs                                html  
    getAxisCoords                           html  
    getChimeras                             html  
    getInsertionsTable                      html  
    gol_clutch1                             html  
    indelCounts                             html  
    indelLabels                             html  
    intersperse                             html  
    makeAlignmentTilePlot                   html  
    mergeChimeras                           html  
    mergeCrisprSets                         html  
    mismatchLabels                          html  
    mutationEfficiency                      html  
    narrowAlignments                        html  
    plotAlignments                          html  
    plotChimeras                            html  
    plotFreqHeatmap                         html  
    plotVariants                            html  
    rcAlns                                  html  
    readTargetBam                           html  
    readsByPCRPrimer                        html  
    readsToTarget                           html  
    refFromAlns                             html  
    reverseCigar                            html  
    rmMultiPCRChimera                       html  
    selectAlnRegionsHelpers                 html  
    selectOps                               html  
    seqsToAln                               html  
    setDNATileColours                       html  
    setMismatchTileColours                  html  
    transformAlnsToLong                     html  
    variantCounts                           html  
    writeFastq                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CrispRVariants' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CrispRVariants' as CrispRVariants_1.20.0.zip
* DONE (CrispRVariants)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CrispRVariants' successfully unpacked and MD5 sums checked