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This page was generated on 2021-09-24 15:06:06 -0400 (Fri, 24 Sep 2021).

BUILD BIN results for CoreGx on tokay2

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raw results

Package 393/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CoreGx 1.4.1  (landing page)
Benjamin Haibe-Kains
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/CoreGx
git_branch: RELEASE_3_13
git_last_commit: 1bc1d98
git_last_commit_date: 2021-05-31 16:11:19 -0400 (Mon, 31 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CoreGx
Version: 1.4.1
Command: rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.4.1.tar.gz
StartedAt: 2021-09-24 07:53:27 -0400 (Fri, 24 Sep 2021)
EndedAt: 2021-09-24 07:54:49 -0400 (Fri, 24 Sep 2021)
EllapsedTime: 82.1 seconds
RetCode: 0
Status:   OK  
PackageFile: CoreGx_1.4.1.zip
PackageFileSize: 2.066 MiB

Command output

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###
### Running command:
###
###   rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.4.1.tar.gz
###
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install for i386

* installing *source* package 'CoreGx' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Registered S3 method overwritten by 'ggplot2':
  method        from
  print.element sets
Creating a generic function for 'colnames' from package 'base' in package 'CoreGx'
Creating a generic function for 'rownames' from package 'base' in package 'CoreGx'
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CoreGx'
    finding HTML links ... done
    CoreSet-accessors                       html  
    CoreSet-class                           html  
    CoreSet                                 html  
    Create                                  html  
    DataMapper-accessors                    html  
    DataMapper-class                        html  
    LongTable-class                         html  
    LongTable                               html  
    LongTableDataMapper-accessors           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CoreGx.buildbin-libdir/00LOCK-CoreGx/00new/CoreGx/help/assayMap+2CLongTableDataMapper+2CList-method.html
    LongTableDataMapper-class               html  
    LongTableDataMapper                     html  
    amcc                                    html  
    as                                      html  
    as.data.frame.LongTable                 html  
    as.data.table.LongTable                 html  
    as.long.table                           html  
    assayCols                               html  
    buildLongTable                          html  
    callingWaterfall                        html  
    cash-LongTable-method                   html  
    cash-set-LongTable-method               html  
    checkColumnCardinality                  html  
    checkCsetStructure                      html  
    clevelandSmall_cSet                     html  
    colIDs                                  html  
    colMeta                                 html  
    connectivityScore                       html  
    cosinePerm                              html  
    dot-                                    html  
    dot-convertCSetMolecularProfilesToSE    html  
    dot-distancePointLine                   html  
    dot-distancePointSegment                html  
    dot-intersectList                       html  
    dot-sensitivityToLongTable              html  
    dot-symSetDiffList                      html  
    dot-unionList                           html  
    drugSensitivitySig                      html  
    exampleDataMapper                       html  
    getIntern                               html  
    guessMapping-LongTableDataMapper-method
                                            html  
    guessMapping                            html  
    gwc                                     html  
    idCols-LongTable-method                 html  
    idCols                                  html  
    is.items                                html  
    lapply-MultiAssayExperiment-method      html  
    list_or_LongTable-class                 html  
    mcc                                     html  
    merckLongTable                          html  
    metaConstruct                           html  
    metadata-LongTable-method               html  
    metadata-set-LongTable-method           html  
    reindex-LongTable-method                html  
    reindex                                 html  
    rowIDs                                  html  
    rowMeta                                 html  
    sensitivityInfo-set                     html  
    sensitivityInfo                         html  
    sensitivityMeasures-set                 html  
    sensitivityMeasures                     html  
    sensitivityProfiles-set                 html  
    sensitivityProfiles                     html  
    sensitivityRaw-set                      html  
    sensitivityRaw                          html  
    sensitivitySlotToLongTable              html  
    show-CoreSet-method                     html  
    show-LongTable-method                   html  
    showSigAnnot                            html  
    sub-LongTable-ANY-ANY-ANY-method        html  
    sub-subset-LongTable-ANY-ANY-method     html  
    subset-LongTable-method                 html  
    subsetTo                                html  
    summarizeMolecularProfiles              html  
    summarizeSensitivityProfiles            html  
    updateCellId                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CoreGx' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CoreGx' as CoreGx_1.4.1.zip
* DONE (CoreGx)