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This page was generated on 2021-09-17 15:06:32 -0400 (Fri, 17 Sep 2021).

BUILD BIN results for ChromSCape on machv2

To the developers/maintainers of the ChromSCape package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChromSCape.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 306/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChromSCape 1.2.62  (landing page)
Pacome Prompsy
Snapshot Date: 2021-09-16 04:50:11 -0400 (Thu, 16 Sep 2021)
git_url: https://git.bioconductor.org/packages/ChromSCape
git_branch: RELEASE_3_13
git_last_commit: 752d173
git_last_commit_date: 2021-09-14 04:58:21 -0400 (Tue, 14 Sep 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ChromSCape
Version: 1.2.62
Command: rm -rf ChromSCape.buildbin-libdir && mkdir ChromSCape.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChromSCape_1.2.62.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChromSCape.buildbin-libdir
StartedAt: 2021-09-17 02:03:05 -0400 (Fri, 17 Sep 2021)
EndedAt: 2021-09-17 02:05:04 -0400 (Fri, 17 Sep 2021)
EllapsedTime: 119.2 seconds
RetCode: 0
Status:   OK  
PackageFile: ChromSCape_1.2.62.tgz
PackageFileSize: 5.53 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf ChromSCape.buildbin-libdir && mkdir ChromSCape.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChromSCape_1.2.62.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ChromSCape.buildbin-libdir
###
##############################################################################
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ChromSCape.buildbin-libdir ChromSCape_1.2.62.tar.gz'
>>>>>>> 

* installing *source* package ‘ChromSCape’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c as_dist.cpp -o as_dist.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ChromSCape.so RcppExports.o as_dist.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/ChromSCape.buildbin-libdir/00LOCK-ChromSCape/00new/ChromSCape/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ChromSCape)


>>>>>>> 
>>>>>>> FIXING LINKS FOR ChromSCape.buildbin-libdir/ChromSCape/libs/ChromSCape.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "ChromSCape.buildbin-libdir/ChromSCape/libs/ChromSCape.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "ChromSCape.buildbin-libdir/ChromSCape/libs/ChromSCape.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "ChromSCape.buildbin-libdir/ChromSCape/libs/ChromSCape.so"