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This page was generated on 2021-09-24 15:05:41 -0400 (Fri, 24 Sep 2021).

BUILD results for ChIPSeqSpike on nebbiolo1

To the developers/maintainers of the ChIPSeqSpike package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChIPSeqSpike.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 299/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChIPSeqSpike 1.12.0  (landing page)
Nicolas Descostes
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/ChIPSeqSpike
git_branch: RELEASE_3_13
git_last_commit: 8b73542
git_last_commit_date: 2021-05-19 12:33:09 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: ChIPSeqSpike
Version: 1.12.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChIPSeqSpike
StartedAt: 2021-09-23 06:54:24 -0400 (Thu, 23 Sep 2021)
EndedAt: 2021-09-23 06:55:31 -0400 (Thu, 23 Sep 2021)
EllapsedTime: 67.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChIPSeqSpike
###
##############################################################################
##############################################################################


* checking for file ‘ChIPSeqSpike/DESCRIPTION’ ... OK
* preparing ‘ChIPSeqSpike’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChIPSeqSpike.Rmd’ using rmarkdown
Loading required package: rtracklayer
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
Warning: Package 'ChIPSeqSpike' is deprecated and will be removed from
  Bioconductor version 3.14
Quitting from lines 72-98 (ChIPSeqSpike.Rmd) 
Error: processing vignette 'ChIPSeqSpike.Rmd' failed with diagnostics:
No genomes installed!
--- failed re-building ‘ChIPSeqSpike.Rmd’

SUMMARY: processing the following file failed:
  ‘ChIPSeqSpike.Rmd’

Error: Vignette re-building failed.
Execution halted