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This page was generated on 2021-07-21 15:05:17 -0400 (Wed, 21 Jul 2021).

INSTALL results for ChAMP on tokay2

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raw results

Package 283/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ChAMP 2.22.0  (landing page)
Yuan Tian
Snapshot Date: 2021-07-20 04:50:13 -0400 (Tue, 20 Jul 2021)
URL: https://git.bioconductor.org/packages/ChAMP
Branch: RELEASE_3_13
Last Commit: 2350b07
Last Changed Date: 2021-05-19 12:01:34 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: ChAMP
Version: 2.22.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ChAMP_2.22.0.tar.gz && rm -rf ChAMP.buildbin-libdir && mkdir ChAMP.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChAMP.buildbin-libdir ChAMP_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ChAMP_2.22.0.zip && rm ChAMP_2.22.0.tar.gz ChAMP_2.22.0.zip
StartedAt: 2021-07-20 11:34:23 -0400 (Tue, 20 Jul 2021)
EndedAt: 2021-07-20 11:36:03 -0400 (Tue, 20 Jul 2021)
EllapsedTime: 100.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ChAMP_2.22.0.tar.gz && rm -rf ChAMP.buildbin-libdir && mkdir ChAMP.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChAMP.buildbin-libdir ChAMP_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ChAMP_2.22.0.zip && rm ChAMP_2.22.0.tar.gz ChAMP_2.22.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 30 5937k   30 1828k    0     0  3203k      0  0:00:01 --:--:--  0:00:01 3202k
 33 5937k   33 2012k    0     0  1279k      0  0:00:04  0:00:01  0:00:03 1279k
 88 5937k   88 5240k    0     0  2026k      0  0:00:02  0:00:02 --:--:-- 2026k
100 5937k  100 5937k    0     0  2173k      0  0:00:02  0:00:02 --:--:-- 2174k

install for i386

* installing *source* package 'ChAMP' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning message:
replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate' 
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP'
Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP'
Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP'
Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP'
Warning: replacing previous import 'plyr::is.discrete' by 'Hmisc::is.discrete' when loading 'ChAMP'
Warning: replacing previous import 'plyr::summarize' by 'Hmisc::summarize' when loading 'ChAMP'
Warning: replacing previous import 'plotly::subplot' by 'Hmisc::subplot' when loading 'ChAMP'
Warning: replacing previous import 'GenomicRanges::sort' by 'globaltest::sort' when loading 'ChAMP'
Warning: replacing previous import 'plotly::last_plot' by 'ggplot2::last_plot' when loading 'ChAMP'
Warning: replacing previous import 'globaltest::model.matrix' by 'stats::model.matrix' when loading 'ChAMP'
Warning: replacing previous import 'globaltest::p.adjust' by 'stats::p.adjust' when loading 'ChAMP'
Note: possible error in 'dmrcate(myannotation, ': unused argument (mc.cores = cores) 
** help
*** installing help indices
  converting help for package 'ChAMP'
    finding HTML links ... done
    Block.GUI                               html  
    ChAMP-package                           html  
    CpG.GUI                                 html  
    DMP.GUI                                 html  
    DMR.GUI                                 html  
    QC.GUI                                  html  
    champ.Block                             html  
    champ.CNA                               html  
    champ.DMP                               html  
    champ.DMR                               html  
    champ.GSEA                              html  
    champ.QC                                html  
    champ.SVD                               html  
    champ.ebGSEA                            html  
    champ.filter                            html  
    champ.import                            html  
    champ.impute                            html  
    champ.load                              html  
    champ.norm                              html  
    champ.process                           html  
    champ.refbase                           html  
    champ.runCombat                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate'
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP'
Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP'
Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP'
Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP'
Warning: replacing previous import 'plyr::is.discrete' by 'Hmisc::is.discrete' when loading 'ChAMP'
Warning: replacing previous import 'plyr::summarize' by 'Hmisc::summarize' when loading 'ChAMP'
Warning: replacing previous import 'plotly::subplot' by 'Hmisc::subplot' when loading 'ChAMP'
Warning: replacing previous import 'GenomicRanges::sort' by 'globaltest::sort' when loading 'ChAMP'
Warning: replacing previous import 'plotly::last_plot' by 'ggplot2::last_plot' when loading 'ChAMP'
Warning: replacing previous import 'globaltest::model.matrix' by 'stats::model.matrix' when loading 'ChAMP'
Warning: replacing previous import 'globaltest::p.adjust' by 'stats::p.adjust' when loading 'ChAMP'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate'
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP'
Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP'
Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP'
Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP'
Warning: replacing previous import 'plyr::is.discrete' by 'Hmisc::is.discrete' when loading 'ChAMP'
Warning: replacing previous import 'plyr::summarize' by 'Hmisc::summarize' when loading 'ChAMP'
Warning: replacing previous import 'plotly::subplot' by 'Hmisc::subplot' when loading 'ChAMP'
Warning: replacing previous import 'GenomicRanges::sort' by 'globaltest::sort' when loading 'ChAMP'
Warning: replacing previous import 'plotly::last_plot' by 'ggplot2::last_plot' when loading 'ChAMP'
Warning: replacing previous import 'globaltest::model.matrix' by 'stats::model.matrix' when loading 'ChAMP'
Warning: replacing previous import 'globaltest::p.adjust' by 'stats::p.adjust' when loading 'ChAMP'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChAMP' ...
** testing if installed package can be loaded
Warning: replacing previous import 'minfi::getMeth' by 'bsseq::getMeth' when loading 'DMRcate'
No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi'
Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP'
Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP'
Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP'
Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP'
Warning: replacing previous import 'plyr::is.discrete' by 'Hmisc::is.discrete' when loading 'ChAMP'
Warning: replacing previous import 'plyr::summarize' by 'Hmisc::summarize' when loading 'ChAMP'
Warning: replacing previous import 'plotly::subplot' by 'Hmisc::subplot' when loading 'ChAMP'
Warning: replacing previous import 'GenomicRanges::sort' by 'globaltest::sort' when loading 'ChAMP'
Warning: replacing previous import 'plotly::last_plot' by 'ggplot2::last_plot' when loading 'ChAMP'
Warning: replacing previous import 'globaltest::model.matrix' by 'stats::model.matrix' when loading 'ChAMP'
Warning: replacing previous import 'globaltest::p.adjust' by 'stats::p.adjust' when loading 'ChAMP'
* MD5 sums
packaged installation of 'ChAMP' as ChAMP_2.22.0.zip
* DONE (ChAMP)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'ChAMP' successfully unpacked and MD5 sums checked