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This page was generated on 2021-07-30 15:06:18 -0400 (Fri, 30 Jul 2021).

BUILD BIN results for CellNOptR on machv2

To the developers/maintainers of the CellNOptR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellNOptR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 266/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellNOptR 1.38.0  (landing page)
A.Gabor
Snapshot Date: 2021-07-29 04:50:02 -0400 (Thu, 29 Jul 2021)
URL: https://git.bioconductor.org/packages/CellNOptR
Branch: RELEASE_3_13
Last Commit: 8e211e0
Last Changed Date: 2021-05-19 11:50:40 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: CellNOptR
Version: 1.38.0
Command: rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CellNOptR.buildbin-libdir
StartedAt: 2021-07-30 01:29:07 -0400 (Fri, 30 Jul 2021)
EndedAt: 2021-07-30 01:29:50 -0400 (Fri, 30 Jul 2021)
EllapsedTime: 42.6 seconds
RetCode: 0
Status:   OK  
PackageFile: CellNOptR_1.38.0.tgz
PackageFileSize: 2.085 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CellNOptR.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CellNOptR.buildbin-libdir CellNOptR_1.38.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CellNOptR’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -I./include  -fPIC  -Wall -g -O2  -c getFit.c -o getFit.o
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
        int selCounter = 0;
            ^
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
        int selection[40];
            ^
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
        int or_max = 0;
            ^
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
        int nReacs = INTEGER(nReacs_in)[0];
            ^
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
        int curr_max = 0;
            ^
5 warnings generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -I./include  -fPIC  -Wall -g -O2  -c simulatorT1.c -o simulatorT1.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  -I./include  -fPIC  -Wall -g -O2  -c simulatorTN.c -o simulatorTN.o
simulatorTN.c:303:24: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        if((track_cond == nCond)) {
            ~~~~~~~~~~~^~~~~~~~
simulatorTN.c:303:24: note: remove extraneous parentheses around the comparison to silence this warning
        if((track_cond == nCond)) {
           ~           ^       ~
simulatorTN.c:303:24: note: use '=' to turn this equality comparison into an assignment
        if((track_cond == nCond)) {
                       ^~
                       =
simulatorTN.c:501:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
            if((track_cond == nCond)) {
                ~~~~~~~~~~~^~~~~~~~
simulatorTN.c:501:28: note: remove extraneous parentheses around the comparison to silence this warning
            if((track_cond == nCond)) {
               ~           ^       ~
simulatorTN.c:501:28: note: use '=' to turn this equality comparison into an assignment
            if((track_cond == nCond)) {
                           ^~
                           =
2 warnings generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CellNOptR.so getFit.o simulatorT1.o simulatorTN.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/CellNOptR.buildbin-libdir/00LOCK-CellNOptR/00new/CellNOptR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellNOptR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so"