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This page was generated on 2021-09-20 15:04:46 -0400 (Mon, 20 Sep 2021).

CHECK results for CSSQ on nebbiolo1

To the developers/maintainers of the CSSQ package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CSSQ.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 418/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CSSQ 1.4.1  (landing page)
Fan Lab at Georgia Institute of Technology
Snapshot Date: 2021-09-19 04:50:10 -0400 (Sun, 19 Sep 2021)
git_url: https://git.bioconductor.org/packages/CSSQ
git_branch: RELEASE_3_13
git_last_commit: d067a65
git_last_commit_date: 2021-07-28 00:28:16 -0400 (Wed, 28 Jul 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CSSQ
Version: 1.4.1
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:CSSQ.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings CSSQ_1.4.1.tar.gz
StartedAt: 2021-09-19 09:24:38 -0400 (Sun, 19 Sep 2021)
EndedAt: 2021-09-19 09:28:11 -0400 (Sun, 19 Sep 2021)
EllapsedTime: 212.5 seconds
RetCode: 0
Status:   OK  
CheckDir: CSSQ.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:CSSQ.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings CSSQ_1.4.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/CSSQ.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CSSQ/DESCRIPTION’ ... OK
* this is package ‘CSSQ’ version ‘1.4.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CSSQ’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

CSSQ.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL CSSQ
###
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* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘CSSQ’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CSSQ)

Tests output


Example timings

CSSQ.Rcheck/CSSQ-Ex.timings

nameusersystemelapsed
DBAnalyze0.4060.0280.434
ansTransform0.1010.0160.117
getBgSubVal3.7790.3864.191
getRegionCounts1.7550.0401.795
kmeansNormalize0.0040.0000.004
loadCountData0.1400.0200.161
normalizeData0.1300.0080.138
plotDist0.2770.0760.353
preprocessData1.7830.1281.911