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This page was generated on 2021-09-24 15:06:06 -0400 (Fri, 24 Sep 2021).

INSTALL results for CODEX on tokay2

To the developers/maintainers of the CODEX package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CODEX.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 358/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CODEX 1.24.0  (landing page)
Yuchao Jiang
Snapshot Date: 2021-09-23 04:50:12 -0400 (Thu, 23 Sep 2021)
git_url: https://git.bioconductor.org/packages/CODEX
git_branch: RELEASE_3_13
git_last_commit: 0051ee2
git_last_commit_date: 2021-05-19 12:10:21 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CODEX
Version: 1.24.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CODEX_1.24.0.tar.gz && rm -rf CODEX.buildbin-libdir && mkdir CODEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CODEX.buildbin-libdir CODEX_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CODEX_1.24.0.zip && rm CODEX_1.24.0.tar.gz CODEX_1.24.0.zip
StartedAt: 2021-09-23 10:08:18 -0400 (Thu, 23 Sep 2021)
EndedAt: 2021-09-23 10:09:21 -0400 (Thu, 23 Sep 2021)
EllapsedTime: 63.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CODEX_1.24.0.tar.gz && rm -rf CODEX.buildbin-libdir && mkdir CODEX.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CODEX.buildbin-libdir CODEX_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CODEX_1.24.0.zip && rm CODEX_1.24.0.tar.gz CODEX_1.24.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  734k  100  734k    0     0  1379k      0 --:--:-- --:--:-- --:--:-- 1382k

install for i386

* installing *source* package 'CODEX' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CODEX'
    finding HTML links ... done
    CODEX-package                           html  
    bambedObjDemo                           html  
    choiceofK                               html  
    coverageObjDemo                         html  
    gcDemo                                  html  
    getbambed                               html  
    getcoverage                             html  
    getgc                                   html  
    getmapp                                 html  
    mappDemo                                html  
    mapp_ref                                html  
    mappability                             html  
    normObjDemo                             html  
    normalize                               html  
    normalize2                              html  
    qc                                      html  
    qcObjDemo                               html  
    segment                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CODEX' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CODEX' as CODEX_1.24.0.zip
* DONE (CODEX)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CODEX' successfully unpacked and MD5 sums checked