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This page was generated on 2021-09-22 15:05:11 -0400 (Wed, 22 Sep 2021).

INSTALL results for COCOA on tokay2

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raw results

Package 356/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COCOA 2.6.0  (landing page)
John Lawson
Snapshot Date: 2021-09-21 04:50:12 -0400 (Tue, 21 Sep 2021)
git_url: https://git.bioconductor.org/packages/COCOA
git_branch: RELEASE_3_13
git_last_commit: 81a954d
git_last_commit_date: 2021-05-19 12:39:05 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: COCOA
Version: 2.6.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/COCOA_2.6.0.tar.gz && rm -rf COCOA.buildbin-libdir && mkdir COCOA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COCOA.buildbin-libdir COCOA_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL COCOA_2.6.0.zip && rm COCOA_2.6.0.tar.gz COCOA_2.6.0.zip
StartedAt: 2021-09-21 10:28:20 -0400 (Tue, 21 Sep 2021)
EndedAt: 2021-09-21 10:29:25 -0400 (Tue, 21 Sep 2021)
EllapsedTime: 64.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/COCOA_2.6.0.tar.gz && rm -rf COCOA.buildbin-libdir && mkdir COCOA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=COCOA.buildbin-libdir COCOA_2.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL COCOA_2.6.0.zip && rm COCOA_2.6.0.tar.gz COCOA_2.6.0.zip
###
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100 1693k  100 1693k    0     0  2278k      0 --:--:-- --:--:-- --:--:-- 2279k

install for i386

* installing *source* package 'COCOA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'COCOA'
    finding HTML links ... done
    COCOA                                   html  
    aggregateSignal                         html  
    aggregateSignalGRList                   html  
    atf3_chr1                               html  
    brcaATACCoord1                          html  
    brcaATACData1                           html  
    brcaMCoord1                             html  
    brcaMetadata                            html  
    brcaMethylData1                         html  
    brcaPCScores                            html  
    brcaPCScores657                         html  
    convertToFromNullDist                   html  
    esr1_chr1                               html  
    gata3_chr1                              html  
    getGammaPVal                            html  
    getMetaRegionProfile                    html  
    getPermStat                             html  
    getTopRegions                           html  
    nrf1_chr1                               html  
    plotAnnoScoreDist                       html  
    regionQuantileByTargetVar               html  
    rsRankingIndex                          html  
    rsScoreHeatmap                          html  
    rsScores                                html  
    runCOCOA                                html  
    runCOCOAPerm                            html  
    signalAlongAxis                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'COCOA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'COCOA' as COCOA_2.6.0.zip
* DONE (COCOA)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'COCOA' successfully unpacked and MD5 sums checked