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This page was generated on 2021-09-13 15:06:21 -0400 (Mon, 13 Sep 2021).

INSTALL results for CNVRanger on tokay2

To the developers/maintainers of the CNVRanger package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNVRanger.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 353/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNVRanger 1.8.0  (landing page)
Ludwig Geistlinger
Snapshot Date: 2021-09-12 04:50:10 -0400 (Sun, 12 Sep 2021)
git_url: https://git.bioconductor.org/packages/CNVRanger
git_branch: RELEASE_3_13
git_last_commit: dfb9864
git_last_commit_date: 2021-05-19 12:40:54 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CNVRanger
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CNVRanger_1.8.0.tar.gz && rm -rf CNVRanger.buildbin-libdir && mkdir CNVRanger.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVRanger.buildbin-libdir CNVRanger_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CNVRanger_1.8.0.zip && rm CNVRanger_1.8.0.tar.gz CNVRanger_1.8.0.zip
StartedAt: 2021-09-12 08:56:26 -0400 (Sun, 12 Sep 2021)
EndedAt: 2021-09-12 08:57:20 -0400 (Sun, 12 Sep 2021)
EllapsedTime: 53.9 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CNVRanger_1.8.0.tar.gz && rm -rf CNVRanger.buildbin-libdir && mkdir CNVRanger.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNVRanger.buildbin-libdir CNVRanger_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CNVRanger_1.8.0.zip && rm CNVRanger_1.8.0.tar.gz CNVRanger_1.8.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  989k  100  989k    0     0  2039k      0 --:--:-- --:--:-- --:--:-- 2044k

install for i386

* installing *source* package 'CNVRanger' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNVRanger'
    finding HTML links ... done
    cnvEQTL                                 html  
    finding level-2 HTML links ... done

    cnvGWAS                                 html  
    cnvOncoPrint                            html  
    generateGDS                             html  
    importLrrBaf                            html  
    plotEQTL                                html  
    plotManhattan                           html  
    plotRecurrentRegions                    html  
    populationRanges                        html  
    setupCnvGWAS                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CNVRanger' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNVRanger' as CNVRanger_1.8.0.zip
* DONE (CNVRanger)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CNVRanger' successfully unpacked and MD5 sums checked