Back to Multiple platform build/check report for BioC 3.13
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-13 15:05:19 -0400 (Wed, 13 Oct 2021).

INSTALL results for CNORdt on tokay2

To the developers/maintainers of the CNORdt package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNORdt.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 343/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNORdt 1.34.0  (landing page)
A. MacNamara
Snapshot Date: 2021-10-12 04:50:13 -0400 (Tue, 12 Oct 2021)
git_url: https://git.bioconductor.org/packages/CNORdt
git_branch: RELEASE_3_13
git_last_commit: 2fc1fa3
git_last_commit_date: 2021-05-19 11:54:09 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: CNORdt
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CNORdt_1.34.0.tar.gz && rm -rf CNORdt.buildbin-libdir && mkdir CNORdt.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNORdt.buildbin-libdir CNORdt_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CNORdt_1.34.0.zip && rm CNORdt_1.34.0.tar.gz CNORdt_1.34.0.zip
StartedAt: 2021-10-12 08:21:43 -0400 (Tue, 12 Oct 2021)
EndedAt: 2021-10-12 08:22:32 -0400 (Tue, 12 Oct 2021)
EllapsedTime: 49.5 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CNORdt_1.34.0.tar.gz && rm -rf CNORdt.buildbin-libdir && mkdir CNORdt.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CNORdt.buildbin-libdir CNORdt_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CNORdt_1.34.0.zip && rm CNORdt_1.34.0.tar.gz CNORdt_1.34.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 70336  100 70336    0     0   443k      0 --:--:-- --:--:-- --:--:--  446k

install for i386

* installing *source* package 'CNORdt' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c simulatorDT.c -o simulatorDT.o
simulatorDT.c: In function 'simulatorDT':
simulatorDT.c:55:6: warning: unused variable 'nTimes' [-Wunused-variable]
  int nTimes = INTEGER(nTimes_in)[0];
      ^~~~~~
simulatorDT.c:53:6: warning: unused variable 'nSignals' [-Wunused-variable]
  int nSignals = INTEGER(nSignals_in)[0];
      ^~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o CNORdt.dll tmp.def simulatorDT.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CNORdt.buildbin-libdir/00LOCK-CNORdt/00new/CNORdt/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CNORdt'
    finding HTML links ... done
    CNOlistPB                               html  
    computeScoreDT                          html  
    convert2array                           html  
    cutAndPlotResultsDT                     html  
    finding level-2 HTML links ... done

    gaBinaryDT                              html  
    getFitDT                                html  
    modelPB                                 html  
    simulatorDT                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CNORdt' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c simulatorDT.c -o simulatorDT.o
simulatorDT.c: In function 'simulatorDT':
simulatorDT.c:55:6: warning: unused variable 'nTimes' [-Wunused-variable]
  int nTimes = INTEGER(nTimes_in)[0];
      ^~~~~~
simulatorDT.c:53:6: warning: unused variable 'nSignals' [-Wunused-variable]
  int nSignals = INTEGER(nSignals_in)[0];
      ^~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o CNORdt.dll tmp.def simulatorDT.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/CNORdt.buildbin-libdir/CNORdt/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CNORdt' as CNORdt_1.34.0.zip
* DONE (CNORdt)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CNORdt' successfully unpacked and MD5 sums checked