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This page was generated on 2021-09-17 15:06:30 -0400 (Fri, 17 Sep 2021).

BUILD BIN results for BayesSpace on machv2

To the developers/maintainers of the BayesSpace package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BayesSpace.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 128/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BayesSpace 1.2.0  (landing page)
Matt Stone
Snapshot Date: 2021-09-16 04:50:11 -0400 (Thu, 16 Sep 2021)
git_url: https://git.bioconductor.org/packages/BayesSpace
git_branch: RELEASE_3_13
git_last_commit: 53377bd
git_last_commit_date: 2021-05-19 12:56:21 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: BayesSpace
Version: 1.2.0
Command: rm -rf BayesSpace.buildbin-libdir && mkdir BayesSpace.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BayesSpace_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BayesSpace.buildbin-libdir
StartedAt: 2021-09-17 01:47:37 -0400 (Fri, 17 Sep 2021)
EndedAt: 2021-09-17 01:48:46 -0400 (Fri, 17 Sep 2021)
EllapsedTime: 69.1 seconds
RetCode: 0
Status:   OK  
PackageFile: BayesSpace_1.2.0.tgz
PackageFileSize: 1.36 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf BayesSpace.buildbin-libdir && mkdir BayesSpace.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BayesSpace_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BayesSpace.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BayesSpace.buildbin-libdir BayesSpace_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BayesSpace’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppDist/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppProgress/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppDist/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppProgress/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c cluster.cpp -o cluster.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BayesSpace.so RcppExports.o cluster.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/BayesSpace.buildbin-libdir/00LOCK-BayesSpace/00new/BayesSpace/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BayesSpace)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BayesSpace.buildbin-libdir/BayesSpace/libs/BayesSpace.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "BayesSpace.buildbin-libdir/BayesSpace/libs/BayesSpace.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "BayesSpace.buildbin-libdir/BayesSpace/libs/BayesSpace.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "BayesSpace.buildbin-libdir/BayesSpace/libs/BayesSpace.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "BayesSpace.buildbin-libdir/BayesSpace/libs/BayesSpace.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "BayesSpace.buildbin-libdir/BayesSpace/libs/BayesSpace.so"