Back to Multiple platform build/check report for BioC 3.14
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-21 13:05:58 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ATACseqQC on tokay2


To the developers/maintainers of the ATACseqQC package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ATACseqQC.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 94/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ATACseqQC 1.18.0  (landing page)
Jianhong Ou
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/ATACseqQC
git_branch: RELEASE_3_14
git_last_commit: eeaad0d
git_last_commit_date: 2021-10-26 12:35:11 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ATACseqQC
Version: 1.18.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ATACseqQC_1.18.0.tar.gz && rm -rf ATACseqQC.buildbin-libdir && mkdir ATACseqQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ATACseqQC.buildbin-libdir ATACseqQC_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ATACseqQC_1.18.0.zip && rm ATACseqQC_1.18.0.tar.gz ATACseqQC_1.18.0.zip
StartedAt: 2022-01-20 07:10:37 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 07:13:54 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 197.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ATACseqQC_1.18.0.tar.gz && rm -rf ATACseqQC.buildbin-libdir && mkdir ATACseqQC.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ATACseqQC.buildbin-libdir ATACseqQC_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ATACseqQC_1.18.0.zip && rm ATACseqQC_1.18.0.tar.gz ATACseqQC_1.18.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 11 11.0M   11 1322k    0     0  2763k      0  0:00:04 --:--:--  0:00:04 2766k
 63 11.0M   63 7203k    0     0  4901k      0  0:00:02  0:00:01  0:00:01 4900k
100 11.0M  100 11.0M    0     0  5195k      0  0:00:02  0:00:02 --:--:-- 5197k

install for i386

* installing *source* package 'ATACseqQC' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ATACseqQC'
    finding HTML links ... done
    ATACseqQC-package                       html  
    DB                                      html  
    NFRscore                                html  
    PTscore                                 html  
    TSSEscore                               html  
    bamQC                                   html  
    distanceDyad                            html  
    enrichedFragments                       html  
    estimateLibComplexity                   html  
    factorFootprints                        html  
    footprintsScanner                       html  
    fragSizeDist                            html  
    peakdet                                 html  
    plotCorrelation                         html  
    plotFootprints                          html  
    pwmscores                               html  
    readBamFile                             html  
    finding level-2 HTML links ... done

    readsDupFreq                            html  
    saturationPlot                          html  
    shiftGAlignments                        html  
    shiftGAlignmentsList                    html  
    shiftReads                              html  
    splitBam                                html  
    splitGAlignmentsByCut                   html  
    vPlot                                   html  
    writeListOfGAlignments                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ATACseqQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ATACseqQC' as ATACseqQC_1.18.0.zip
* DONE (ATACseqQC)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ATACseqQC' successfully unpacked and MD5 sums checked