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This page was generated on 2021-11-28 18:35:03 -0500 (Sun, 28 Nov 2021).

CHECK results for miRNATarget on nebbiolo2

To the developers/maintainers of the miRNATarget package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 231/404HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.33.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2021-11-28 08:30:02 -0500 (Sun, 28 Nov 2021)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: master
git_last_commit: bd2c75c
git_last_commit_date: 2021-10-26 11:48:33 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: miRNATarget
Version: 1.33.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings miRNATarget_1.33.0.tar.gz
StartedAt: 2021-11-28 14:55:49 -0500 (Sun, 28 Nov 2021)
EndedAt: 2021-11-28 14:56:57 -0500 (Sun, 28 Nov 2021)
EllapsedTime: 67.9 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings miRNATarget_1.33.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/miRNATarget.Rcheck’
* using R Under development (unstable) (2021-11-16 r81199)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.



Installation output

miRNATarget.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘miRNATarget’ ...
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0540.0040.058
HS_refseq_to_affy_hc_g1100.0030.0000.004
HS_refseq_to_affy_hg_focus0.0130.0000.014
HS_refseq_to_affy_hg_u133_plus_20.050.000.05
HS_refseq_to_affy_hg_u133a0.030.000.03
HS_refseq_to_affy_hg_u133a_20.0290.0000.029
HS_refseq_to_affy_hg_u133b0.0140.0000.015
HS_refseq_to_affy_hg_u95a0.0160.0040.020
HS_refseq_to_affy_hg_u95av20.0190.0000.019
HS_refseq_to_affy_hg_u95b0.0120.0000.012
HS_refseq_to_affy_hg_u95c0.0090.0000.009
HS_refseq_to_affy_hg_u95d0.0050.0000.006
HS_refseq_to_affy_hg_u95e0.0060.0040.010
HS_refseq_to_affy_huex_1_0_st_v20.7990.0320.831
HS_refseq_to_affy_hugene_1_0_st_v10.0430.0000.042
HS_refseq_to_affy_hugenefl0.0120.0000.012
HS_refseq_to_affy_u133_x3p0.0620.0000.061
HS_refseq_to_agilent_cgh_44b0.0110.0000.011
HS_refseq_to_agilent_wholegenome0.0620.0000.062
HS_refseq_to_canonical_transcript_stable_id0.0570.0040.060
HS_refseq_to_ccds0.0350.0000.034
HS_refseq_to_codelink0.0320.0040.036
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0000.002
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
HS_refseq_to_embl0.6280.0320.660
HS_refseq_to_ensembl_exon_id0.0010.0000.002
HS_refseq_to_ensembl_gene_id0.0430.0000.043
HS_refseq_to_ensembl_peptide_id0.0320.0080.039
HS_refseq_to_ensembl_transcript_id0.0430.0080.051
HS_refseq_to_entrezgene0.0420.0000.043
HS_refseq_to_hgnc_id0.1710.0000.172
HS_refseq_to_hgnc_symbol0.0400.0000.039
HS_refseq_to_hgnc_transcript_name0.0430.0000.043
HS_refseq_to_illumina_humanht_120.0440.0000.044
HS_refseq_to_illumina_humanwg_6_v10.0380.0000.038
HS_refseq_to_illumina_humanwg_6_v20.0290.0040.033
HS_refseq_to_illumina_humanwg_6_v30.0380.0000.039
HS_refseq_to_interpro0.10.00.1
HS_refseq_to_ipi0.0930.0000.093
HS_refseq_to_merops0.0040.0000.003
HS_refseq_to_pdb0.0870.0000.086
HS_refseq_to_pfam0.0590.0000.059
HS_refseq_to_phalanx_onearray0.0360.0000.036
HS_refseq_to_protein_id1.0880.1521.241
HS_refseq_to_refseq_dna0.050.000.05
HS_refseq_to_refseq_genomic0.0010.0000.001
HS_refseq_to_refseq_peptide0.0850.0000.084
HS_refseq_to_rfam0.0020.0000.002
HS_refseq_to_rfam_gene_name0.0010.0000.001
HS_refseq_to_rfam_transcript_name0.0000.0010.001
HS_refseq_to_smart0.0290.0030.032
HS_refseq_to_tigrfam0.0040.0000.005
HS_refseq_to_ucsc0.0450.0000.045
HS_refseq_to_unigene0.0530.0000.053
HS_refseq_to_uniprot_genename0.0370.0000.037
HS_refseq_to_uniprot_genename_transcript_name0.0020.0000.001
HS_refseq_to_uniprot_sptrembl0.0010.0000.001
HS_refseq_to_uniprot_swissprot0.0010.0000.001
HS_refseq_to_uniprot_swissprot_accession0.0000.0000.001
HS_refseq_to_wikigene_id0.0010.0000.000
HS_refseq_to_wikigene_name0.0360.0000.035
MM_conv_id0.0020.0000.002
MM_refseq_to_affy_mg_u74a0.0120.0000.013
MM_refseq_to_affy_mg_u74av20.0110.0000.011
MM_refseq_to_affy_mg_u74b0.0100.0000.009
MM_refseq_to_affy_mg_u74bv20.0090.0000.009
MM_refseq_to_affy_mg_u74c0.0040.0000.004
MM_refseq_to_affy_mg_u74cv20.0050.0000.004
MM_refseq_to_affy_moe430a0.0260.0000.026
MM_refseq_to_affy_moe430b0.0130.0000.013
MM_refseq_to_affy_moex_1_0_st_v10.3080.0000.309
MM_refseq_to_affy_mogene_1_0_st_v10.0330.0000.033
MM_refseq_to_affy_mouse430_20.0340.0000.035
MM_refseq_to_affy_mouse430a_20.0250.0000.025
MM_refseq_to_affy_mu11ksuba0.0090.0000.009
MM_refseq_to_affy_mu11ksubb0.0060.0000.006
MM_refseq_to_agilent_wholegenome0.0460.0000.045
MM_refseq_to_canonical_transcript_stable_id0.0440.0000.044
MM_refseq_to_ccds0.0200.0040.024
MM_refseq_to_codelink0.0270.0000.027
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0020.0000.002
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
MM_refseq_to_embl0.2410.0040.245
MM_refseq_to_ensembl_exon_id0.0010.0000.002
MM_refseq_to_ensembl_gene_id0.1550.0000.155
MM_refseq_to_ensembl_peptide_id0.0300.0000.031
MM_refseq_to_ensembl_transcript_id0.0340.0000.034
MM_refseq_to_entrezgene0.0280.0000.029
MM_refseq_to_fantom0.080.000.08
MM_refseq_to_illumina_mousewg_6_v10.0420.0000.043
MM_refseq_to_illumina_mousewg_6_v20.0400.0000.041
MM_refseq_to_interpro0.0800.0000.079
MM_refseq_to_ipi0.0010.0000.001
MM_refseq_to_merops0.0040.0000.003
MM_refseq_to_mgi_id0.030.000.03
MM_refseq_to_mgi_symbol0.0310.0000.031
MM_refseq_to_mgi_transcript_name0.0350.0000.034
MM_refseq_to_pdb0.0090.0000.008
MM_refseq_to_pfam0.0470.0000.047
MM_refseq_to_phalanx_onearray0.030.000.03
MM_refseq_to_protein_id0.2230.0000.223
MM_refseq_to_refseq_dna0.0340.0000.035
MM_refseq_to_refseq_peptide0.0610.0000.060
MM_refseq_to_rfam0.0020.0000.001
MM_refseq_to_rfam_gene_name0.0010.0000.001
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0230.0000.023
MM_refseq_to_tigrfam0.0030.0000.004
MM_refseq_to_ucsc0.0350.0000.035
MM_refseq_to_unigene0.0460.0000.046
MM_refseq_to_uniprot_genename0.0320.0000.032
MM_refseq_to_uniprot_genename_transcript_name0.0010.0000.001
MM_refseq_to_uniprot_sptrembl0.0010.0000.001
MM_refseq_to_uniprot_swissprot0.0010.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0010.0000.001
MM_refseq_to_wikigene_id0.0010.0000.001
MM_refseq_to_wikigene_name0.0270.0000.027
TBL21.1290.0601.188
TBL2_HS1.1210.1521.273
TBL2_MM0.6350.1320.768
conv_id0.0020.0000.002
id_conv0.0260.0000.026