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This page was generated on 2021-11-28 18:35:03 -0500 (Sun, 28 Nov 2021).

CHECK results for hapmap100kxba on nebbiolo2

To the developers/maintainers of the hapmap100kxba package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 155/404HostnameOS / ArchINSTALLBUILDCHECK
hapmap100kxba 1.37.0  (landing page)
Benilton Carvalho
Snapshot Date: 2021-11-28 08:30:02 -0500 (Sun, 28 Nov 2021)
git_url: https://git.bioconductor.org/packages/hapmap100kxba
git_branch: master
git_last_commit: 87978e8
git_last_commit_date: 2021-10-26 11:41:25 -0500 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: hapmap100kxba
Version: 1.37.0
Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:hapmap100kxba.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings hapmap100kxba_1.37.0.tar.gz
StartedAt: 2021-11-28 14:49:54 -0500 (Sun, 28 Nov 2021)
EndedAt: 2021-11-28 14:50:07 -0500 (Sun, 28 Nov 2021)
EllapsedTime: 13.1 seconds
RetCode: 0
Status:   OK  
CheckDir: hapmap100kxba.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:hapmap100kxba.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings hapmap100kxba_1.37.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/hapmap100kxba.Rcheck’
* using R Under development (unstable) (2021-11-16 r81199)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hapmap100kxba/DESCRIPTION’ ... OK
* this is package ‘hapmap100kxba’ version ‘1.37.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hapmap100kxba’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 73.5Mb
  sub-directories of 1Mb or more:
    celFiles  73.4Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.15-data-experiment/meat/hapmap100kxba.Rcheck/00check.log’
for details.



Installation output

hapmap100kxba.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL hapmap100kxba
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’
* installing *source* package ‘hapmap100kxba’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hapmap100kxba)

Tests output


Example timings

hapmap100kxba.Rcheck/hapmap100kxba-Ex.timings

nameusersystemelapsed
hapmap100kxba-package000